SMTL ID : 5lsw.1

A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-2-2-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.118 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.118 SO4.3: 2 residues within 4Å: Chain C: F.48, G.49 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.49 Water bridges: C:T.50 SO4.4: 3 residues within 4Å: Chain C: G.1, P.2, H.3 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.3, C:H.3 Salt bridges: C:H.3 SO4.5: 4 residues within 4Å: Chain C: Q.189, T.190, Y.191, R.232 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.191 Water bridges: C:E.192 Salt bridges: C:R.232

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: K.9, Q.12, W.13, E.16, N.25, E.29 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.9, A:Q.12, A:W.13, A:E.16, A:E.29, A:E.29 TRS.6: 5 residues within 4Å: Chain C: K.9, Q.12, W.13, E.16, N.25 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:K.9, C:K.9, C:E.16, C:N.25, C:N.25 Water bridges: C:Q.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sgromo, A. et al., A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin. Nat Commun (2017)

Release Date

2017-02-15

Peptides

Cell differentiation protein RCD1 homolog: AC
LD12033p: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Cell differentiation protein RCD1 homolog

LD12033p

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