SMTL ID : 5lzk.1

Structure of the domain of unknown function DUF1669 from human FAM83B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: K.27, K.30 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: M.133, S.135, H.140 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: F.49, K.50, V.53, C.83 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: R.94, C.167, V.168 Ligand excluded by PLIP

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 8 residues within 4Å: Chain A: Q.86, I.91, R.92, V.93, R.94, V.168, P.169, F.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.91, A:V.93 EDO.6: 11 residues within 4Å: Chain A: M.113, Q.115, F.117, E.158, L.162 Chain B: F.11, H.12, R.15, L.141, S.142, M.143 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.115 Water bridges: B:P.13, B:R.15 EDO.7: 13 residues within 4Å: Chain A: I.25, L.38, M.40, K.116, F.117, L.118, M.126, Y.127, G.128, S.129, Y.130, Y.132, V.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.128, A:Y.130, A:Y.132, A:Y.132 EDO.8: 6 residues within 4Å: Chain A: H.6, I.7 Chain B: G.4, T.5, Q.150, L.151 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.6, A:I.7, B:G.4, B:T.5 EDO.9: 8 residues within 4Å: Chain B: Q.86, I.91, R.92, V.93, R.94, V.168, P.169, F.172 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.91, B:V.93 EDO.10: 12 residues within 4Å: Chain A: F.11, H.12, P.13, R.15, L.141, S.142, M.143 Chain B: M.113, Q.115, F.117, E.158, L.162 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.15, A:R.15, B:Q.115, B:E.158 Water bridges: A:H.12, A:P.13 EDO.11: 8 residues within 4Å: Chain B: V.35, A.37, Y.63, L.119, C.122, D.156, F.159, R.160 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.156 Water bridges: B:C.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., Structure of the domain of unknown function DUF1669 from human FAM83B. To Be Published

Release Date

2016-10-26

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein FAM83B

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