SMTL ID : 5m5g.2 (1 other biounit)

Crystal structure of the Chaetomium Thermophilum polycomb repressive complex 2 (PRC2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x VAL- MET- LEU- PRO- GLY- ARG- GLY- VAL- PRO: Fragment from molecular 2 (region containing putative polycomb protein Suz12)(Non-covalent)

VAL-MET-LEU-PRO-GLY-ARG-GLY-VAL-PRO.1: 20 residues within 4Å: Chain A: Y.645, H.652, G.655, V.656, S.673, Y.674, L.675, F.676, T.677, W.685, R.696, P.708, I.710, F.735, N.736, Y.737, D.739, N.740, F.741 Ligands: SAH.10 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.675, A:F.676, A:W.685, A:W.685, A:I.710, A:F.735, A:Y.737 Hydrogen bonds: A:S.673, A:S.673, A:S.673, A:L.675, A:T.677, A:T.677, A:Y.737, A:N.740, A:N.740

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.546, C.567, C.574, C.579 Ligands: ZN.3, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.546, A:C.567, A:C.574, A:C.579 ZN.3: 6 residues within 4Å: Chain A: C.555, C.574, C.582, C.603 Ligands: ZN.2, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.555, A:C.574, A:C.582, A:C.603 ZN.4: 7 residues within 4Å: Chain A: C.546, C.548, C.555, C.565, C.574 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.546, A:C.548, A:C.555, A:C.565 ZN.5: 6 residues within 4Å: Chain A: C.504, H.506, C.510, C.516 Ligands: ZN.6, ZN.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.504, A:H.506, A:C.510, A:C.516 ZN.6: 6 residues within 4Å: Chain A: C.510, C.528, C.534, C.539 Ligands: ZN.5, ZN.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.510, A:C.528, A:C.534, A:C.539 ZN.7: 6 residues within 4Å: Chain A: C.504, C.518, C.528, C.532 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.504, A:C.518, A:C.528, A:C.532 ZN.8: 4 residues within 4Å: Chain A: C.327, C.330, C.335, H.337 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.327, A:C.330, A:C.335, A:H.337 ZN.9: 4 residues within 4Å: Chain A: C.389, C.393, C.434, C.444 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.389, A:C.393, A:C.434, A:C.444

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.10: 18 residues within 4Å: Chain A: L.623, C.626, G.627, Y.628, K.671, V.672, S.673, Y.674, R.696, Y.697, N.699, H.700, Y.737, F.741, L.744, T.745, K.746 Ligands: VAL-MET-LEU-PRO-GLY-ARG-GLY-VAL-PRO.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:C.626, A:Y.628, A:Y.628, A:K.671, A:S.673, A:N.699, A:H.700, A:H.700, A:K.746 Water bridges: A:Y.674, A:Y.674

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Comment on "Structural basis of histone H3K27 trimethylation by an active polycomb repressive complex 2". Science (2016)

Release Date

2017-01-11

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative uncharacterized protein

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