SMTL ID : 5wf7.1

Chaetomium thermophilum Polycomb Repressive Complex 2 bound to GSK126

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain B: C.546, C.567, C.574, C.579 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.546, B:C.567, B:C.574, B:C.579 ZN.2: 7 residues within 4Å: Chain B: C.546, C.555, C.574, C.582, C.603 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.555, B:C.574, B:C.582, B:C.603 ZN.3: 6 residues within 4Å: Chain B: C.546, C.548, C.555, C.565 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.546, B:C.548, B:C.555, B:C.565 ZN.4: 6 residues within 4Å: Chain B: C.504, H.506, C.510, C.516 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.504, B:H.506, B:C.510, B:C.516 ZN.5: 7 residues within 4Å: Chain B: C.504, C.510, C.528, C.534, C.539 Ligands: ZN.4, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.510, B:C.528, B:C.534, B:C.539 ZN.6: 6 residues within 4Å: Chain B: C.504, C.518, C.528, C.532 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.504, B:C.518, B:C.528, B:C.532 ZN.7: 4 residues within 4Å: Chain B: C.327, C.330, C.335, H.337 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.327, B:C.330, B:C.335, B:H.337 ZN.8: 4 residues within 4Å: Chain B: C.389, C.393, C.434, C.444 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.389, B:C.393, B:C.434, B:C.444

1 x A9G: 1-[(2S)-butan-2-yl]-N-[(4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-3-methyl-6-[6-(piperazin-1-yl)pyridin-3-yl]-1H-indole-4-carboxamide(Non-covalent)

A9G.9: 13 residues within 4Å: Chain B: P.121, Y.122, R.123, F.124, H.126, G.627, Y.628, R.662, V.672, R.696, Y.697, I.698, N.699 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:R.123, B:R.123, B:R.662, B:Y.697, B:Y.697 Hydrogen bonds: B:R.123, B:G.627, B:Y.628, B:Y.628 Water bridges: B:P.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bratkowski, M. et al., An Evolutionarily Conserved Structural Platform for PRC2 Inhibition by a Class of Ezh2 Inhibitors. Sci Rep (2018)

Release Date

2018-06-27

Peptides

Polycomb Protein EED: A
Histone-lysine-N-methyltransferase EZH2, Polycomb protein SUZ12 chimera: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polycomb Protein EED

Histone-lysine-N-methyltransferase EZH2, Polycomb protein SUZ12 chimera

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