SMTL ID : 5m5u.1 (1 other biounit)

Clathrin heavy chain N-terminal domain bound to a clathrin-box motif from hepatitis D virus large antigen (clade 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x SER- ASP- ILE- LEU- PHE- PRO- ALA: Large delta antigen(Non-covalent)

SER-ASP-ILE-LEU-PHE-PRO-ALA.1: 11 residues within 4Å: Chain A: R.65, R.66, P.67, I.68, S.69, L.84, K.85, A.86, Q.91, F.93, K.100 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.66, A:I.68, A:L.84, A:L.84, A:F.93, A:F.93 Hydrogen bonds: A:P.67, A:S.69, A:Q.91, A:Q.91 Salt bridges: A:K.100 SER-ASP-ILE-LEU-PHE-PRO-ALA.2: 10 residues within 4Å: Chain A: I.9, F.11, Q.12, E.13, Y.296, N.298, R.299, I.300, S.301, G.302 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.9, A:F.11, A:F.11, A:E.13, A:R.299, A:I.300 Hydrogen bonds: A:F.11, A:E.13, A:R.299

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: H.104, M.106, T.107, D.108, Y.130 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.104, A:T.107, A:D.108, A:D.108, A:D.108 Water bridges: A:H.104, A:P.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muenzner, J. et al., Cellular and viral peptides bind multiple sites on the N-terminal domain of clathrin. Traffic (2017)

Release Date

2016-11-23

Peptides

Clathrin heavy chain 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Clathrin heavy chain 1

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