SMTL ID : 5m5v.2 (1 other biounit)

Clathrin heavy chain N-terminal domain bound to a clathrin-box motif from hepatitis D virus large antigen (clade 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

3 x LEU- PRO- LEU- LEU- GLU- SER: Large delta antigen(Non-covalent)

LEU-PRO-LEU-LEU-GLU-SER.1: 11 residues within 4Å: Chain A: R.66, P.67, I.68, S.69, L.84, K.85, A.86, T.89, Q.91, F.93, K.98 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:R.66, A:P.67, A:I.68, A:L.84, A:L.84, A:A.86, A:F.93, A:F.93, A:F.93 Hydrogen bonds: A:P.67, A:S.69, A:Q.91, A:Q.91, A:K.98 LEU-PRO-LEU-LEU-GLU-SER.2: 12 residues within 4Å: Chain A: L.7, F.11, E.13, Y.283, Y.296, N.298, R.299, I.300, S.301, G.302, Q.325, L.327 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.11, A:Y.283, A:N.298, A:R.299, A:R.299 Hydrogen bonds: A:F.11, A:E.13, A:E.13, A:N.298, A:N.298, A:R.299, A:Q.325 Water bridges: A:F.11, A:I.300 LEU-PRO-LEU-LEU-GLU-SER.3: 9 residues within 4Å: Chain A: W.166, L.185, S.187, R.190, V.192, S.193, Q.194, I.196, V.235 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.166, A:L.185, A:V.192, A:Q.194, A:I.196, A:V.235 Hydrogen bonds: A:Q.194, A:Q.194 Water bridges: A:R.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muenzner, J. et al., Cellular and viral peptides bind multiple sites on the N-terminal domain of clathrin. Traffic (2017)

Release Date

2016-11-23

Peptides

Clathrin heavy chain 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Clathrin heavy chain 1

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