SMTL ID : 5m5u.2 (1 other biounit)

Clathrin heavy chain N-terminal domain bound to a clathrin-box motif from hepatitis D virus large antigen (clade 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x SER- ASP- ILE- LEU- PHE- PRO- ALA: Large delta antigen(Non-covalent)

SER-ASP-ILE-LEU-PHE-PRO-ALA.1: 10 residues within 4Å: Chain A: R.66, P.67, I.68, S.69, L.84, K.85, A.86, Q.91, F.93, K.100 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.66, A:P.67, A:I.68, A:L.84, A:L.84, A:Q.91, A:F.93, A:F.93 Hydrogen bonds: A:P.67, A:S.69, A:Q.91, A:Q.91 Salt bridges: A:K.100 SER-ASP-ILE-LEU-PHE-PRO-ALA.2: 11 residues within 4Å: Chain A: L.7, I.9, F.11, Q.12, E.13, Y.296, N.298, R.299, I.300, S.301, G.302 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.7, A:I.9, A:F.11, A:F.11, A:E.13, A:R.299 Hydrogen bonds: A:F.11, A:E.13, A:R.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muenzner, J. et al., Cellular and viral peptides bind multiple sites on the N-terminal domain of clathrin. Traffic (2017)

Release Date

2016-11-23

Peptides

Clathrin heavy chain 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Clathrin heavy chain 1

Related Entries With Identical Sequence