SMTL ID : 5m8r.1 (3 other biounits)

Crystal structure of human tyrosinase related protein 1 (T391V-R374S-Y362F) in complex with mimosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: R.13, S.14, G.15, R.69, F.70, N.72 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: R.4, F.155, N.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.4, A:N.157 NAG.3: 5 residues within 4Å: Chain A: R.140, E.156, S.268, D.271, N.280 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:S.268, A:S.268, A:N.280 NAG.4: 2 residues within 4Å: Chain A: Y.324, N.326 No protein-ligand interaction detected (PLIP) NAG.5: 6 residues within 4Å: Chain A: G.293, N.294, V.295, A.296, N.361, G.362 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.295, A:A.296, A:N.361

3 x ZN: ZINC ION(Non-covalent)

ZN.6: 6 residues within 4Å: Chain A: H.353, H.357, F.376, H.380 Ligands: ZN.7, MMS.9 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.353, A:H.357, A:H.380, H2O.1 ZN.7: 7 residues within 4Å: Chain A: H.168, H.191, H.200, F.376, H.380 Ligands: ZN.6, MMS.9 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.168, A:H.191, A:H.200, H2O.1 ZN.8: 3 residues within 4Å: Chain A: R.40, E.42, H.76 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.42, A:E.42, A:H.76

1 x MMS: MIMOSINE(Non-covalent)

MMS.9: 11 residues within 4Å: Chain A: H.191, H.353, N.354, H.357, L.358, G.365, Q.366, V.367, S.370 Ligands: ZN.6, ZN.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.357, A:V.367 Hydrogen bonds: A:S.370 Water bridges: A:H.353, A:N.354 pi-Stacking: A:H.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, X. et al., Structure of Human Tyrosinase Related Protein 1 Reveals a Binuclear Zinc Active Site Important for Melanogenesis. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-07-12

Peptides

5,6-dihydroxyindole-2-carboxylic acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

5,6-dihydroxyindole-2-carboxylic acid oxidase

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