SMTL ID : 5m8s.2 (3 other biounits)

Crystal structure of human tyrosinase related protein 1 mutant (T391V-R374S-Y362F) in complex with phenylthiourea (PTU)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: R.13, S.14, G.15, R.69, F.70, N.72 No protein-ligand interaction detected (PLIP)

1 x NAG- MAN: alpha-D-mannopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-MAN.2: 4 residues within 4Å: Chain A: R.4, F.155, E.156, N.157 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.4, A:N.157, A:N.157

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 6 residues within 4Å: Chain A: R.140, E.156, S.268, D.271, Y.272, N.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.271 NAG-NAG.5: 7 residues within 4Å: Chain A: G.293, N.294, V.295, A.296, N.361, G.362, Q.366 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-FUC.4: 3 residues within 4Å: Chain A: Q.54, Y.324, N.326 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.324 Hydrophobic interactions: A:Q.54

1 x URS: N-PHENYLTHIOUREA(Non-covalent)

URS.6: 9 residues within 4Å: Chain A: F.338, N.354, H.357, L.358, G.364, G.365, Q.366, V.367, S.370 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.338, A:F.338, A:N.354, A:L.358, A:L.358, A:V.367 Hydrogen bonds: A:G.365 Water bridges: A:N.354

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 5 residues within 4Å: Chain A: H.168, H.191, H.200, F.376 Ligands: ZN.8 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.168, A:H.191, A:H.200, H2O.6 ZN.8: 5 residues within 4Å: Chain A: H.353, H.357, F.376, H.380 Ligands: ZN.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.353, A:H.357, A:H.380, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, X. et al., Phenylthiourea Binding to Human Tyrosinase-Related Protein 1. Int J Mol Sci (2020)

Release Date

2018-01-31

Peptides

5,6-dihydroxyindole-2-carboxylic acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

5,6-dihydroxyindole-2-carboxylic acid oxidase

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