SMTL ID : 5ma6.1

GFP-binding DARPin 3G124nc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: P.78, D.79, H.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.78, A:D.79, A:H.80 Salt bridges: A:H.80 PO4.2: 5 residues within 4Å: Chain A: V.60, P.61, W.62, P.63, H.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.62 PO4.3: 5 residues within 4Å: Chain A: D.213, N.215 Chain B: D.37, V.38, G.39 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.37, B:D.37, B:G.39, A:N.215 PO4.5: 5 residues within 4Å: Chain B: D.19, H.51, L.52, E.53, I.54 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.19, B:E.53, B:I.54 Salt bridges: B:H.51 PO4.6: 5 residues within 4Å: Chain A: Q.207, F.226 Chain B: H.106, W.114, L.144 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.207 Salt bridges: B:H.106

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: Y.203 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.203, A:Y.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep (2017)

Release Date

2017-12-06

Peptides

Green fluorescent protein: A
3G124nc: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Green fluorescent protein

3G124nc

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