SMTL ID : 5ma9.1 (3 other biounits)

GFP-binding DARPin fusion gc_R11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Y.146, N.147, Y.148, S.208, A.209, L.210 Chain B: K.139 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.146, A:Y.148, A:S.208, A:L.210 Water bridges: B:K.139 EDO.2: 4 residues within 4Å: Chain A: G.15, V.16 Chain B: R.18, R.52 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.16, B:R.52 Water bridges: A:T.14 EDO.3: 5 residues within 4Å: Chain B: K.11, L.14, E.15, D.39, D.40 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.11, B:E.15 Water bridges: B:D.40 EDO.4: 8 residues within 4Å: Chain A: Y.154, M.156, N.167 Chain B: Y.217, F.225, F.250, L.255, F.259 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep (2017)

Release Date

2017-11-08

Peptides

Green fluorescent protein: A
R11: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Green fluorescent protein

R11

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