SMTL ID : 9f23.1 (1 other biounit)

DARPin eGFP complex DP2 (2G156)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: 2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2S)-2-[(2S)-2-oxidanylpropoxy]propoxy]methyl]propane-1,3-diol

01.1: 8 residues within 4Å: Chain A: E.98, R.99, T.100, F.102, K.110, T.111, Y.185, Q.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.100, A:T.100

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: N.152, Y.154, Y.203 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain A: S.150, H.151, N.152, S.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.152, A:S.205 Water bridges: A:S.150 EDO.4: 4 residues within 4Å: Chain A: E.216, K.217, R.218, H.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.217 EDO.6: 3 residues within 4Å: Chain B: T.107, F.109, D.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.110 Water bridges: B:N.128, B:N.128 EDO.7: 2 residues within 4Å: Chain B: Q.101, G.105 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.101 EDO.8: 6 residues within 4Å: Chain B: G.17, D.19, H.51, L.52, E.53, I.54 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.17, B:H.51, B:E.53, B:I.54 Water bridges: B:L.52 EDO.9: 2 residues within 4Å: Chain B: A.16, Q.18 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.16, B:Q.18

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: P.61, W.62, P.63, Y.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.62 Water bridges: A:V.60, A:W.62, A:H.142

3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.10: 8 residues within 4Å: Chain A: E.39, K.46 Chain B: L.11, E.12, R.15, D.36, I.40, L.45 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.46, B:E.12, B:E.12 Water bridges: A:D.41 TRS.11: 4 residues within 4Å: Chain B: K.9, E.21, I.24, L.25 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.9, B:K.9 TRS.12: 4 residues within 4Å: Chain B: T.68, D.69, L.70, G.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.68, B:D.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winkelvoss, D. et al., DARPin eGFP complex DP2 (2G156). To Be Published

Release Date

2024-10-23

Peptides

Green fluorescent protein: A
DARPin DP2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Green fluorescent protein

DARPin DP2

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