- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x 7MF: [(7~{S})-1-bromanyl-6,6-bis(oxidanyl)-4-phenyl-5,7,8,9-tetrahydrobenzo[7]annulen-7-yl]azanium(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.3: 4 residues within 4Å:- Chain A: S.353, D.354, G.356, R.358
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.353, A:R.358
NA.4: 3 residues within 4Å:- Chain A: H.792, R.793, F.795
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.795, A:F.795
NA.5: 1 residues within 4Å:- Chain A: S.529
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.528, A:S.529
NA.6: 2 residues within 4Å:- Chain A: K.472, D.473
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.473, A:D.473
NA.7: 2 residues within 4Å:- Chain A: E.144, E.392
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.144
- Water bridges: A:E.144
NA.8: 4 residues within 4Å:- Chain A: N.420, K.423, S.450, N.451
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.420, A:N.420
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 6 residues within 4Å:- Chain A: L.82, V.83, S.84, V.85, W.95, E.97
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.83
- Water bridges: A:L.82, A:V.85
GOL.10: 6 residues within 4Å:- Chain A: L.372, N.644, G.812, E.849, P.850, R.853
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.644, A:N.644
- Water bridges: A:R.853, A:R.853
GOL.11: 9 residues within 4Å:- Chain A: D.302, F.725, H.726, A.728, M.731, A.734, Y.756, K.759, W.760
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.725, A:K.759, A:W.760
GOL.12: 4 residues within 4Å:- Chain A: T.93, W.95, K.96, E.97
2 PLIP interactions:2 interactions with chain A- Water bridges: A:T.93, A:W.95
GOL.13: 5 residues within 4Å:- Chain A: T.493, P.494, D.495, Q.496, A.497
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.497
- Water bridges: A:T.493
GOL.14: 7 residues within 4Å:- Chain A: K.54, D.79, L.80, K.81, E.118, I.119, S.120
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.120
- Water bridges: A:D.79, A:L.80, A:S.120, A:S.120, A:S.120
GOL.15: 7 residues within 4Å:- Chain A: Q.463, Q.488, R.489, T.490, K.499, Q.500, P.501
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.490, A:Q.500
- Water bridges: A:R.489, A:R.489
GOL.16: 6 residues within 4Å:- Chain A: K.562, E.648, L.649, F.650, D.651, R.856
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.562, A:E.648, A:D.651, A:R.856
- Water bridges: A:E.648, A:L.649
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x MLI: MALONATE ION(Non-functional Binders)
MLI.21: 7 residues within 4Å:- Chain A: Y.397, T.398, L.399, Y.402, E.403, R.846
- Ligands: 7MF.2
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.402
- Water bridges: A:L.399, A:R.846
- Salt bridges: A:R.846
MLI.22: 3 residues within 4Å:- Chain A: G.417, E.418, E.419
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.418, A:E.419
- Water bridges: A:N.420
MLI.23: 10 residues within 4Å:- Chain A: A.552, L.553, L.563, W.567, L.572, L.575, S.584, D.587, A.588, S.591
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:D.587
- Hydrogen bonds: A:L.553, A:S.591
- Water bridges: A:S.591
MLI.24: 6 residues within 4Å:- Chain A: K.29, E.144, W.334, F.335, V.390, M.393
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:K.29, A:V.390
- Hydrogen bonds: A:M.393
- Water bridges: A:K.29, A:K.29, A:K.29, A:W.334, A:I.391
- Salt bridges: A:K.29, A:K.29
MLI.25: 7 residues within 4Å:- Chain A: D.49, L.50, D.51, K.54, T.55, V.56, R.192
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:D.51
- Hydrogen bonds: A:D.49, A:D.49
- Water bridges: A:K.54, A:R.192, A:R.192
- Salt bridges: A:K.54, A:R.192
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peng, G. et al., Insight into the remarkable affinity and selectivity of the aminobenzosuberone scaffold for the M1 aminopeptidases family based on structure analysis. Proteins (2017)
- Release Date
- 2017-04-19
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x 7MF: [(7~{S})-1-bromanyl-6,6-bis(oxidanyl)-4-phenyl-5,7,8,9-tetrahydrobenzo[7]annulen-7-yl]azanium(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peng, G. et al., Insight into the remarkable affinity and selectivity of the aminobenzosuberone scaffold for the M1 aminopeptidases family based on structure analysis. Proteins (2017)
- Release Date
- 2017-04-19
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A