SMTL ID : 5mhl.1 (1 other biounit)

FXIIIa in complex with the inhibitor Mi0621

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 7NX- PHE- ONL- VAL- LYS- VAL- ILE- GLY- NH2: inhibitor Mi0621(Non-covalent)

7NX-PHE-ONL-VAL-LYS-VAL-ILE-GLY-NH2.1: 15 residues within 4Å: Chain A: W.286, Q.320, C.321, I.359, T.372, D.374, S.375, V.376, W.377, N.378, Y.379, H.380, L.446, Y.448, H.466 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.378, A:D.374, A:C.321 Hydrophobic interactions: A:W.377

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: N.443, A.464, E.492, E.497 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.464, A:E.492, A:E.497, H2O.3, H2O.4 CA.3: 5 residues within 4Å: Chain A: A.271, N.274, A.275, K.276, D.278 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:A.271, A:N.274, A:K.276, A:D.278, H2O.2 CA.4: 6 residues within 4Å: Chain A: D.350, D.352, N.354, Q.356, D.358, D.374 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.350, A:D.352, A:Q.356, A:D.358, A:D.374

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: Y.201, L.202, D.203, W.386, F.566, T.568, V.570 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.203, A:W.386, A:T.568 GOL.6: 5 residues within 4Å: Chain A: F.60, D.65, T.66, Y.90, R.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.65 Water bridges: A:D.65, A:D.65 GOL.7: 7 residues within 4Å: Chain A: V.54, T.55, S.56, V.57, T.179, S.180, N.182 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.55, A:S.180, A:S.180, A:N.182 Water bridges: A:T.179

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 2 residues within 4Å: Chain A: Q.87, W.194 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: H.58, L.59, F.60, K.61 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.59, A:F.60, A:K.61 Water bridges: A:F.60, A:E.62 SO4.10: 4 residues within 4Å: Chain A: S.257, G.258, N.261, K.264 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.257, A:N.261 Water bridges: A:N.261, A:N.261, A:K.264 Salt bridges: A:K.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stieler, M. et al., FXIIIa in complex with the inhibitor Mi0621. To Be Published

Release Date

2017-12-20

Peptides

Coagulation factor XIII A chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XIII A chain

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