SMTL ID : 5mhm.2 (1 other biounit)

FXIIIa in complex with the inhibitor ZED1630

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x 7NW- 1TX- NLE- ILE- LEU- PRO- TRP- NH2: inhibitor ZED1630(Non-covalent)

7NW-1TX-NLE-ILE-LEU-PRO-TRP-NH2.1: 20 residues within 4Å: Chain A: Y.221, R.230, W.286, C.321, W.322, F.346, M.357, I.359, V.367, T.372, D.374, S.375, V.376, W.377, N.378, Y.379, H.380, T.405, Q.407, L.446 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.221, A:W.322, A:F.346, A:I.359, A:I.359, A:V.376, A:V.376, A:W.377, A:W.377, A:N.378, A:Y.379, A:L.446 Hydrogen bonds: A:C.321, A:V.376, A:N.378, A:N.378, A:N.378, A:Y.379 Water bridges: A:V.376, A:V.376 Salt bridges: A:H.380

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: A.271, N.274, A.275, K.276, D.278 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.271, A:N.274, A:K.276, A:D.278, A:D.278 CA.3: 6 residues within 4Å: Chain A: D.350, D.352, N.354, Q.356, D.358, D.374 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.350, A:D.352, A:Q.356, A:D.358, A:D.374 CA.6: 4 residues within 4Å: Chain A: N.443, A.464, E.492, E.497 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.464, A:E.492, A:E.497, H2O.4, H2O.5

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: Y.201, L.202, D.203, W.386, F.566, T.568, V.570 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.203, A:D.203, A:T.568, A:T.568 Water bridges: A:Y.201, A:W.386 GOL.5: 5 residues within 4Å: Chain A: F.60, D.65, T.66, Y.90, R.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.67, A:N.67 Water bridges: A:D.65, A:D.65

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 4 residues within 4Å: Chain A: H.58, L.59, F.60, K.61 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.58, A:L.59, A:F.60, A:K.61 Water bridges: A:E.62 Salt bridges: A:K.61 SO4.8: 1 residues within 4Å: Chain A: R.688 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.688 Salt bridges: A:R.688 SO4.9: 4 residues within 4Å: Chain A: S.257, G.258, N.261, K.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.257, A:N.261 Salt bridges: A:K.264

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 6 residues within 4Å: Chain A: A.275, K.276, L.282, V.283, G.284, P.406 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stieler, M. et al., FXIIIa in complex with the inhibitor Mi0621. To Be Published

Release Date

2017-12-20

Peptides

Coagulation factor XIII A chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Coagulation factor XIII A chain

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