SMTL ID : 5mho.2 (1 other biounit)

FXIIIa in complex with the inhibitor ZED2369

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

monomer

Ligands

1 x TRM- 1TX- LEU- ILE- LEU- PRO- TRP- PRO- NH2: inhibitor ZED2369(Non-covalent)

TRM-1TX-LEU-ILE-LEU-PRO-TRP-PRO-NH2.1: 20 residues within 4Å: Chain A: Y.221, W.286, Q.320, C.321, W.322, M.357, I.359, T.372, D.374, S.375, V.376, W.377, N.378, Y.379, H.380, T.405, Q.407, L.446, Y.448, H.466 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.221, A:W.322, A:W.322, A:M.357, A:I.359, A:V.376, A:V.376, A:W.377, A:N.378, A:Y.379, A:L.446 Hydrogen bonds: A:Q.320, A:C.321, A:V.376, A:N.378, A:N.378, A:N.378, A:Y.379, A:Y.448 Salt bridges: A:H.380

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: A.271, N.274, A.275, K.276, D.278 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.271, A:N.274, A:K.276, A:D.278, A:D.278 CA.3: 6 residues within 4Å: Chain A: D.350, D.352, N.354, Q.356, D.358, D.374 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.350, A:D.352, A:Q.356, A:D.358, A:D.374 CA.4: 5 residues within 4Å: Chain A: N.443, D.445, A.464, E.492, E.497 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:A.464, A:E.492, A:E.492, A:E.497

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: H.58, L.59, F.60, K.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.58, A:L.59, A:F.60, A:K.61 SO4.6: 1 residues within 4Å: Chain A: R.688 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.688

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stieler, M. et al., FXIIIa in complex with the inhibitor ZED2369. To Be Published

Release Date

2017-12-20

Peptides

Coagulation factor XIII A chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Coagulation factor XIII A chain

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