SMTL ID : 5mim.1

Xray structure of human furin bound with the 2,5-dideoxystreptamine derived small molecule inhibitor 1n

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.67, D.72, D.74 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.67, A:D.74, H2O.2, H2O.3, H2O.15 CA.2: 6 residues within 4Å: Chain A: D.8, D.55, V.98, N.101, V.103, G.105 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.8, A:D.55, A:V.98, A:V.103, A:G.105 CA.3: 3 residues within 4Å: Chain A: D.151, D.194, E.224 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.194, A:E.224, H2O.5, H2O.9, H2O.13

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: T.202, S.204, T.207, S.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.202, A:T.207, A:S.209 NA.5: 2 residues within 4Å: Chain A: S.172, G.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.172 NA.6: 3 residues within 4Å: Chain A: P.401, S.437, G.438 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.437 NA.7: 1 residues within 4Å: Chain A: E.439 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.439

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain A: Y.206, K.342, Y.464 Ligand excluded by PLIP

2 x 1N: 1-[(1~{R},2~{R},4~{S},5~{S})-2,4-bis(4-carbamimidamidophenoxy)-5-[(4-carbamimidamidophenyl)amino]cyclohexyl]guanidine(Non-covalent)

1N.9: 8 residues within 4Å: Chain A: R.78, D.84, N.85, L.120, D.121, G.122, E.123 Ligands: 1N.10 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.123, A:E.123 Hydrogen bonds: A:N.85, A:R.118 Water bridges: A:D.70, A:D.121 Salt bridges: A:D.121, A:D.121, A:E.123 1N.10: 15 residues within 4Å: Chain A: D.46, D.47, H.87, C.91, L.120, V.124, E.129, S.146, W.147, G.148, P.149, D.157, Y.201, S.261 Ligands: 1N.9 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:H.87, A:L.120, A:L.120, A:V.124, A:V.124, A:W.147 Hydrogen bonds: A:Y.201, A:S.261, A:S.261, A:S.261 Water bridges: A:E.150, A:E.150 Salt bridges: A:D.46, A:E.129, A:D.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dahms, S.O. et al., Structural Studies Revealed Active Site Distortions of Human Furin by a Small Molecule Inhibitor. ACS Chem. Biol. (2017)

Release Date

2017-05-10

Peptides

Furin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Furin

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