SMTL ID : 5mot.1

Crystal structure of CK2alpha with ZT0627 bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

2 x HBD: 4-HYDROXYBENZAMIDE(Non-covalent)

HBD.1: 9 residues within 4Å: Chain A: V.65, I.94, F.112, E.113, H.114, V.115, N.116, I.173 Ligands: ACT.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.65, A:V.65, A:I.94, A:I.173 Hydrogen bonds: A:V.115, A:N.116, A:N.116 Water bridges: A:D.174 HBD.2: 5 residues within 4Å: Chain A: G.47, K.48, Y.49, S.50 Ligands: ACT.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.48, A:Y.49, A:S.50 Water bridges: A:R.46

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: V.52, K.67, I.173, D.174 Ligands: HBD.1, HBD.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.52 Hydrogen bonds: A:D.174, A:D.174 Water bridges: A:W.175 Salt bridges: A:K.67 ACT.4: 6 residues within 4Å: Chain A: K.76, R.79, R.154, L.177, R.190, V.191 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.177, A:V.191 Water bridges: A:R.154 Salt bridges: A:K.76, A:R.79, A:R.154 ACT.5: 5 residues within 4Å: Chain A: Q.35, L.40, V.100, D.102, A.109 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Fusco, C. et al., A fragment-based approach leading to the discovery of a novel binding site and the selective CK2 inhibitor CAM4066. Bioorg. Med. Chem. (2017)

Release Date

2017-05-24

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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