SMTL ID : 8ae7.1

The strucuture of Compound 15 bound to CK2alpha

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.79, R.154, L.177, N.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79, A:R.79, A:R.154, A:R.154

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: Y.38, I.68, V.100, D.102, P.103, A.109 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.38, A:V.100 Hydrogen bonds: A:D.102 Water bridges: A:Q.35, A:Q.35

1 x LVU: 2-[5,6-bis(bromanyl)-1H-indazol-3-yl]ethanenitrile(Non-covalent)

LVU.3: 14 residues within 4Å: Chain A: F.120, L.123, Y.124, L.127, I.132, Y.135, M.136, I.139, P.158, V.161, I.163, L.170, M.220, M.224 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.123, A:Y.124, A:L.127, A:V.161, A:I.163 Hydrogen bonds: A:V.161

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 13 residues within 4Å: Chain A: S.50, V.52, V.65, K.67, I.94, E.113, H.114, V.115, N.160, M.162, I.173, D.174 Ligands: MG.5 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.50, A:E.113, A:V.115, A:D.174 Water bridges: A:K.67, A:D.174 Salt bridges: A:K.67, A:K.67

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: N.160, D.174 Ligands: ADP.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brear, P. et al., A fragment-based approach leading to the discovery of inhibitors of CK2 alpha with a novel mechanism of action. Rsc Med Chem (2022)

Release Date

2023-03-29

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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