SMTL ID : 7zwg.1

The Crystal structure of RO4493940 bound to CK2alpha

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

1 x R7W: (5~{Z})-5-(quinolin-6-ylmethylidene)-1,3-thiazolidine-2,4-dione(Non-covalent)

R7W.1: 12 residues within 4Å: Chain A: L.44, V.52, V.65, K.67, I.94, F.112, E.113, H.114, V.115, N.117, I.173, D.174 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.44, A:V.65, A:V.65, A:I.94, A:F.112, A:F.112, A:I.173, A:I.173 Hydrogen bonds: A:V.115, A:N.117, A:D.174, A:D.174 Water bridges: A:E.80, A:W.175

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 6 residues within 4Å: Chain A: R.9, Q.309, S.310, R.311, T.313, E.316 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Q.309, A:R.311 Salt bridges: A:E.316, A:E.316

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 7 residues within 4Å: Chain A: Q.35, Y.38, V.66, V.100, D.102, P.103, A.109 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.38, A:V.100 Hydrogen bonds: A:Q.35, A:D.102

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: F.323, V.326 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.326, A:V.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reinecke, M. et al., Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors. Nat.Chem.Biol. (2023)

Release Date

2023-05-31

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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