SMTL ID : 5mw6.1

Crystal structure of the BCL6 BTB-domain with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x RC0: 5-chloranyl-~{N}-(4-chlorophenyl)-2-(3,5-dimethylpyrazol-1-yl)pyrimidin-4-amine(Non-covalent)

RC0.1: 10 residues within 4Å: Chain A: N.18, R.21, L.22 Chain B: M.48, A.49, C.50, S.51, G.52, Y.55, Q.110 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.55 Hydrogen bonds: B:M.48 pi-Stacking: B:Y.55 pi-Cation interactions: A:R.21 RC0.2: 11 residues within 4Å: Chain A: M.48, A.49, C.50, S.51, G.52, Y.55, Q.110 Chain B: N.18, R.21, L.22, R.25 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.25, B:R.25, A:M.48 pi-Cation interactions: B:R.21 Hydrophobic interactions: A:Y.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerres, N. et al., Chemically Induced Degradation of the Oncogenic Transcription Factor BCL6. Cell Rep (2017)

Release Date

2017-10-04

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

B-cell lymphoma 6 protein

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