SMTL ID : 5n8e.1

CRYSTAL STRUCTURE OF STREPTAVIDIN WITH PEPTIDE RDPAPAWAHGGG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

hetero-4-3-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain B: V.79, V.101, A.102 Chain C: R.83 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:V.79, B:A.102, C:R.83 Water bridges: B:K.104 NA.2: 3 residues within 4Å: Chain A: A.89 Chain D: H.111, G.137 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Water bridges: A:A.89 Hydrogen bonds: D:G.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyamichev, V.I. et al., Stepwise Evolution Improves Identification of Diverse Peptides Binding to a Protein Target. Sci Rep (2017)

Release Date

2017-10-11

Peptides

Streptavidin: ABCD
ARG-ASP-PRO-ALA-PRO-ALA-TRP-ALA-HIS-GLY-GLY-GLY-NH2: EFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

Streptavidin

ARG-ASP-PRO-ALA-PRO-ALA-TRP-ALA-HIS-GLY-GLY-GLY-NH2

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