SMTL ID : 5neu.2 (3 other biounits)

Localised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-5-5-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.147 Chain F: D.119, S.121, S.123, E.219, A.251 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain A Metal complexes: F:D.119, F:S.121, F:E.219, A:D.147 MG.4: 6 residues within 4Å: Chain G: D.147 Chain L: D.119, S.121, S.123, E.219, A.251 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain G Metal complexes: L:D.119, L:S.121, L:E.219, G:D.147 MG.7: 6 residues within 4Å: Chain M: D.147 Chain R: D.119, S.121, S.123, E.219, A.251 4 PLIP interactions: 1 interactions with chain M, 3 interactions with chain R Metal complexes: M:D.147, R:D.119, R:S.121, R:E.219 MG.10: 6 residues within 4Å: Chain S: D.147 Chain X: D.119, S.121, S.123, E.219, A.251 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain S Metal complexes: X:D.119, X:S.121, X:E.219, S:D.147 MG.13: 6 residues within 4Å: Chain 3: D.119, S.121, S.123, E.219, A.251 Chain Y: D.147 4 PLIP interactions: 3 interactions with chain 3, 1 interactions with chain Y Metal complexes: 3:D.119, 3:S.121, 3:E.219, Y:D.147

10 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain F: E.158, N.214, D.216, P.218, E.219 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.158, F:D.216, F:P.218, F:E.219 CA.3: 5 residues within 4Å: Chain F: D.126, D.127, K.334, D.335, S.336 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.127, F:K.334 CA.5: 5 residues within 4Å: Chain L: E.158, N.214, D.216, P.218, E.219 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:E.158, L:D.216, L:P.218, L:E.219 CA.6: 5 residues within 4Å: Chain L: D.126, D.127, K.334, D.335, S.336 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:D.127, L:K.334 CA.8: 5 residues within 4Å: Chain R: E.158, N.214, D.216, P.218, E.219 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:E.158, R:D.216, R:P.218, R:E.219 CA.9: 5 residues within 4Å: Chain R: D.126, D.127, K.334, D.335, S.336 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:D.127, R:K.334 CA.11: 5 residues within 4Å: Chain X: E.158, N.214, D.216, P.218, E.219 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:E.158, X:D.216, X:P.218, X:E.219 CA.12: 5 residues within 4Å: Chain X: D.126, D.127, K.334, D.335, S.336 2 PLIP interactions: 2 interactions with chain X Metal complexes: X:D.127, X:K.334 CA.14: 5 residues within 4Å: Chain 3: E.158, N.214, D.216, P.218, E.219 4 PLIP interactions: 4 interactions with chain 3 Metal complexes: 3:E.158, 3:D.216, 3:P.218, 3:E.219 CA.15: 5 residues within 4Å: Chain 3: D.126, D.127, K.334, D.335, S.336 2 PLIP interactions: 2 interactions with chain 3 Metal complexes: 3:D.127, 3:K.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotecha, A. et al., Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus. Nat Commun (2017)

Release Date

2017-06-21

Peptides

O1 Manisa VP1: AGMSY
O1 Manisa VP2: BHNTZ
Capsid protein: CIOU0
O1 Manisa VP4: DJPV1
Integrin alpha-V: EKQW2
Integrin beta-6: FLRX3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

G
1

M
1

S
1

Y
1

B
2

H
2

N
2

T
2

Z
2

C
3

I
3

O
3

U
3

0
3

D
4

J
4

P
4

V
4

1
4

E
A

K
A

Q
A

W
A

2
A

F
B

L
B

R
B

X
B

3
B

O1 Manisa VP1

O1 Manisa VP2

Capsid protein

O1 Manisa VP4

Integrin alpha-V

Integrin beta-6

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