SMTL ID : 5neu.4 (3 other biounits)

Localised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.147 Chain F: D.119, S.121, S.123, E.219, A.251 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain A Metal complexes: F:D.119, F:S.121, F:E.219, A:D.147

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain F: E.158, N.214, D.216, P.218, E.219 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.158, F:D.216, F:P.218, F:E.219 CA.3: 5 residues within 4Å: Chain F: D.126, D.127, K.334, D.335, S.336 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.127, F:K.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotecha, A. et al., Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus. Nat Commun (2017)

Release Date

2017-06-21

Peptides

O1 Manisa VP1: A
O1 Manisa VP2: B
Capsid protein: C
O1 Manisa VP4: D
Integrin alpha-V: E
Integrin beta-6: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
A

F
B

O1 Manisa VP1

O1 Manisa VP2

Capsid protein

O1 Manisa VP4

Integrin alpha-V

Integrin beta-6

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