SMTL ID : 5ng7.1

Novel epoxide hydrolases belonging to the alpha/beta hydrolases superfamily in metagenomes from hot environments

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: F.265, P.266, E.267, C.268 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: T.134, R.135, F.255 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: F.265, P.266, E.267, C.268 Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: A.168, K.171, N.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172 Water bridges: A:K.171 EDO.3: 6 residues within 4Å: Chain A: N.138, S.139, L.140, R.141 Chain B: Q.176 Ligands: PEG.8 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.138, A:L.140, A:R.141, A:R.141, B:Q.176 EDO.7: 3 residues within 4Å: Chain B: W.38, Y.39, I.191 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.187

1 x SER: SERINE(Non-covalent)

SER.6: 9 residues within 4Å: Chain B: D.101, W.102, I.105, P.127, Y.132, S.146, Y.209, L.213, I.244 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.101, B:Y.132, B:Y.148 Water bridges: B:Q.142, B:Q.142

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 7 residues within 4Å: Chain A: K.137, N.138, L.143 Chain B: W.147, F.169, Q.176 Ligands: EDO.3 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:K.137 Hydrogen bonds: B:Q.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrandi, E.E. et al., New Thermophilic alpha / beta Class Epoxide Hydrolases Found in Metagenomes From Hot Environments. Front Bioeng Biotechnol (2018)

Release Date

2018-05-16

Peptides

epoxide hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

epoxide hydrolase

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