SMTL ID : 8agn.2 (1 other biounit)

Cyclohexane epoxide low pH soak of epoxide hydrolase from metagenomic source ch65

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

4 x 7EX: (1R,6S)-7-oxabicyclo[4.1.0]heptane(Non-covalent)

7EX.1: 6 residues within 4Å: Chain A: D.101, W.102, I.105, Y.132, L.213, I.244 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.102, A:I.105, A:Y.132, A:L.213, A:I.244 7EX.2: 5 residues within 4Å: Chain A: F.34, P.35, Y.148, M.173, S.177 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.148 7EX.8: 8 residues within 4Å: Chain B: D.101, W.102, I.105, P.127, Y.148, Y.209, L.213, I.244 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.102, B:I.105, B:Y.209, B:L.213, B:I.244 7EX.9: 7 residues within 4Å: Chain B: F.34, P.35, Y.148, M.173, S.177, V.242, W.271 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.148, B:Y.148, B:M.173, B:V.242, B:W.271

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: F.113, N.114, Q.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.116, A:Q.116 EDO.4: 5 residues within 4Å: Chain A: E.159, S.163, F.167, W.196, L.202 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.196 EDO.5: 6 residues within 4Å: Chain A: F.169, N.172, M.173, Q.176 Chain B: K.137, L.143 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.172, A:Q.176, B:K.137 EDO.10: 6 residues within 4Å: Chain B: L.76, P.129, Y.132, M.133, N.212, L.213 No protein-ligand interaction detected (PLIP) EDO.11: 4 residues within 4Å: Chain B: K.263, Y.264, F.265, H.283 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.283 EDO.12: 5 residues within 4Å: Chain B: P.115, Q.116, V.118, E.119, V.231 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.116, B:V.118

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 1 residues within 4Å: Chain B: E.3 No protein-ligand interaction detected (PLIP) PEG.7: 8 residues within 4Å: Chain A: K.137, N.138, L.140, L.143 Chain B: F.169, N.172, M.173, Q.176 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.169, B:N.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isupov, M.N. et al., Complexes of epoxide hydrolase from metagenomic source ch65. To Be Published

Release Date

2023-08-16

Peptides

Alpha/beta epoxide hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
CCC

B
DDD

Alpha/beta epoxide hydrolase

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