SMTL ID : 8agm.2 (1 other biounit)

Limonene epoxide low pH soak of epoxide hydrolase from metagenomic source ch65

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

4 x LEO: D-LIMONENE 1,2-EPOXIDE(Covalent)(Non-covalent)

LEO.1: 11 residues within 4Å: Chain A: D.101, W.102, I.105, P.127, Y.132, Q.142, Y.148, L.213, A.243, I.244, L.248 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.102, A:I.105, A:Y.132, A:L.213, A:I.244, A:L.248 Water bridges: A:Y.148 LEO.2: 8 residues within 4Å: Chain A: F.34, W.147, Y.148, L.170, M.173, S.177, A.243, W.271 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.34, A:W.147, A:Y.148, A:Y.148, A:L.170, A:M.173, A:A.243 Hydrogen bonds: A:S.177 LEO.5: 10 residues within 4Å: Chain B: D.101, W.102, I.105, P.127, Y.132, Q.142, S.146, Y.148, L.213, A.243 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.102, B:I.105, B:Y.132, B:L.213 LEO.6: 5 residues within 4Å: Chain B: Y.148, L.170, M.173, S.177, A.243 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.148, B:Y.148, B:L.170, B:M.173, B:A.243 Hydrogen bonds: B:S.177

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: F.265, P.266, E.267, C.268 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: H.7, H.18, W.38, N.63 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: H.7, H.18, W.38, N.63 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: F.265, E.267 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isupov, M.N. et al., Complexes of epoxide hydrolase from metagenomic source ch65. To Be Published

Release Date

2023-08-16

Peptides

Alpha/beta epoxide hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
CCC

B
DDD

Alpha/beta epoxide hydrolase

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