SMTL ID : 5oex.3 (2 other biounits)

Complex with iodine ion for thiocyanate dehydrogenase from Thioalkalivibrio paradoxus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.125, D.233, H.300 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.125, A:D.233, A:H.300, H2O.4, H2O.9 CU.2: 6 residues within 4Å: Chain A: K.22, H.54, H.55, H.447 Ligands: CU.3, IOD.6 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.54, A:H.447, H2O.4, H2O.6 CU.3: 5 residues within 4Å: Chain A: K.22, H.54, H.447 Ligands: CU.2, IOD.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.54, A:H.447, H2O.6 CU.4: 4 residues within 4Å: Chain A: H.356, H.401, H.447 Ligands: IOD.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.356, A:H.401 CU.7: 3 residues within 4Å: Chain B: H.125, D.233, H.300 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.125, B:D.233, B:D.233, B:H.300 CU.8: 4 residues within 4Å: Chain B: H.356, H.401, H.447 Ligands: IOD.13 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.356, B:H.401, H2O.17 CU.9: 5 residues within 4Å: Chain B: K.22, H.54, H.447 Ligands: CU.10, IOD.13 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.54, B:H.447, H2O.11 CU.10: 6 residues within 4Å: Chain B: K.22, H.54, H.55, H.447 Ligands: CU.9, IOD.13 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.54, B:H.447, H2O.11, H2O.12

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.5: 4 residues within 4Å: Chain A: W.206, V.209, G.212, A.215 Ligand excluded by PLIP IOD.6: 7 residues within 4Å: Chain A: H.55, H.356, H.401, H.447 Ligands: CU.2, CU.3, CU.4 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain B: W.206, V.209, G.212, A.215 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain B: Y.83 Ligand excluded by PLIP IOD.13: 7 residues within 4Å: Chain B: H.55, H.356, H.401, H.447 Ligands: CU.8, CU.9, CU.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tikhonova, T.V. et al., Discovery and characterization of a novel copper containing enzyme - THIOCYANATE DEHYDROGENASE. To Be Published

Release Date

2018-08-01

Peptides

THIOCYANATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

THIOCYANATE DEHYDROGENASE

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