SMTL ID : 6g5m.1 (2 other biounits)

The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with CU(I) ions.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

15 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.125, D.233, H.300 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.125, A:D.233, A:H.300, H2O.1 CU.2: 5 residues within 4Å: Chain A: K.22, H.54, H.55, H.447 Ligands: CU.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.54, A:H.447, H2O.5, H2O.8 CU.3: 4 residues within 4Å: Chain A: F.355, W.371, D.399, H.401 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.399, A:H.401, H2O.8 CU.4: 4 residues within 4Å: Chain A: F.355, H.356, H.401, H.447 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.356, A:H.401 CU.5: 4 residues within 4Å: Chain A: H.54, H.55, H.125 Ligands: CU.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.55, H2O.5, H2O.7, H2O.8 CU.6: 2 residues within 4Å: Chain A: H.330, D.331 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.330 CU.7: 1 residues within 4Å: Chain A: H.228 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.228, H2O.7 CU.8: 3 residues within 4Å: Chain B: H.125, D.233, H.300 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.125, B:D.233, B:D.233, B:H.300 CU.9: 5 residues within 4Å: Chain B: K.22, H.54, H.55, H.447 Ligands: CU.12 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.54, B:H.447, H2O.11 CU.10: 4 residues within 4Å: Chain B: W.371, D.399, H.401, H.447 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.399, B:H.401, H2O.14, H2O.15 CU.11: 4 residues within 4Å: Chain B: F.355, H.356, H.401, H.447 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.356, B:H.401, H2O.17 CU.12: 6 residues within 4Å: Chain B: H.54, H.55, V.124, H.125, E.207 Ligands: CU.9 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.55, H2O.11, H2O.17 CU.13: 4 residues within 4Å: Chain B: L.12, G.13, Y.15, D.408 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.12, B:D.408, H2O.17 CU.14: 2 residues within 4Å: Chain B: H.330, D.331 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.330 CU.15: 2 residues within 4Å: Chain B: L.227, H.228 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.228, H2O.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Polyakov, K.M. et al., The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with CU(I) ions. To Be Published

Release Date

2019-04-10

Peptides

thiocyanate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

thiocyanate dehydrogenase

Related Entries With Identical Sequence