SMTL ID : 5olo.1

Structure of the A2A-StaR2-bRIL562-Tozadenant complex at 3.1A obtained from in meso soaking experiments.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x 9XW: ~{N}-(4-methoxy-7-morpholin-4-yl-1,3-benzothiazol-2-yl)-4-methyl-4-oxidanyl-piperidine-1-carboxamide(Non-covalent)

9XW.1: 16 residues within 4Å: Chain A: A.73, I.76, A.91, F.178, E.179, M.184, M.187, L.355, H.356, I.358, N.359, T.362, H.370, A.371, M.376, I.380 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.355, A:I.358, A:H.370 Hydrogen bonds: A:E.179, A:N.359, A:N.359 pi-Stacking: A:F.178, A:F.178

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 8 residues within 4Å: Chain A: L.68, A.82, A.83, G.86, F.89, I.90, Q.173 Ligands: OLC.20 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.68, A:A.82, A:F.89, A:I.90, A:I.90 Hydrogen bonds: A:A.83, A:Q.173 CLR.3: 7 residues within 4Å: Chain A: L.350, P.354, I.357, I.358, F.361, S.369, A.371 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.350, A:P.354, A:I.357, A:I.358, A:F.361, A:F.361, A:F.361, A:A.371 Hydrogen bonds: A:S.369 CLR.4: 10 residues within 4Å: Chain A: F.192, F.193, L.197, L.353, I.357, C.360, F.361, F.364, C.365 Ligands: OLC.16 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.192, A:F.193, A:L.197, A:L.353, A:I.357, A:F.361, A:F.361, A:F.361, A:F.364, A:F.364

10 x OLA: OLEIC ACID(Non-covalent)

OLA.5: 4 residues within 4Å: Chain A: T.75, T.78 Ligands: OLC.17, OLC.20 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.75 OLA.6: 2 residues within 4Å: Chain A: W.42 Ligands: OLC.22 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.42 Hydrogen bonds: A:W.42 OLA.7: 8 residues within 4Å: Chain A: F.54, F.103, A.107, I.110, D.111, I.114, V.126, C.138 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.107, A:I.110 OLA.8: 5 residues within 4Å: Chain A: I.26, L.29, T.385, V.388, V.389 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.26, A:L.29, A:T.385, A:V.388 OLA.9: 7 residues within 4Å: Chain A: G.15, V.18, Y.19, V.22, W.374, Y.377, L.378 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.18, A:V.22, A:W.374, A:Y.377 OLA.10: 4 residues within 4Å: Chain A: I.137, L.141, A.144 Ligands: OLA.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.141, A:A.144 OLA.11: 8 residues within 4Å: Chain A: K.339, A.342, I.343, G.346, L.347, L.350, L.353 Ligands: OLA.14 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.343, A:L.347, A:L.350, A:L.353 OLA.12: 6 residues within 4Å: Chain A: R.130, G.133, I.137, V.140 Ligands: OLA.10, OLC.15 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.137, A:I.137, A:V.140 OLA.13: 3 residues within 4Å: Chain A: W.42 Ligands: OLC.21, OLC.22 No protein-ligand interaction detected (PLIP) OLA.14: 7 residues within 4Å: Chain A: L.200, L.201, A.342, A.345, G.346, A.349 Ligands: OLA.11 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.200, A:L.201, A:A.349

8 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.15: 5 residues within 4Å: Chain A: A.144, M.150, L.151 Ligands: OLA.12, OLC.19 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.144, A:L.151 Hydrogen bonds: A:M.150 OLC.16: 3 residues within 4Å: Chain A: F.364 Ligands: CLR.4, OLC.18 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.364 Hydrogen bonds: A:F.364 OLC.17: 4 residues within 4Å: Chain A: P.12, S.16, T.78 Ligands: OLA.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.12, A:S.16, A:T.78 OLC.18: 3 residues within 4Å: Chain A: Y.189, L.197 Ligands: OLC.16 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.197 Hydrogen bonds: A:Y.189 OLC.19: 7 residues within 4Å: Chain A: H.85, A.136, F.143, M.150, L.151 Ligands: OLC.15, OLC.21 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.136, A:F.143, A:F.143, A:F.143, A:L.151 OLC.20: 10 residues within 4Å: Chain A: V.67, L.68, P.71, F.72, T.75, F.80, C.81, Q.173 Ligands: CLR.2, OLA.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.67, A:L.68, A:P.71, A:F.72, A:T.75, A:F.80 Hydrogen bonds: A:Q.173, A:Q.173 OLC.21: 12 residues within 4Å: Chain A: Y.53, V.56, S.57, A.60, L.64, G.128, A.132, W.139, F.143 Ligands: OLA.13, OLC.19, OLC.22 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.56, A:A.60, A:L.64, A:W.139, A:W.139, A:F.143 OLC.22: 9 residues within 4Å: Chain A: C.38, W.42, Q.48, Y.53, V.56, A.60 Ligands: OLA.6, OLA.13, OLC.21 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.56, A:A.60

1 x NA: SODIUM ION(Non-functional Binders)

NA.23: 4 residues within 4Å: Chain A: D.62, S.101, N.386, S.387 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.101, A:S.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rucktooa, P. et al., Towards high throughput GPCR crystallography: In Meso soaking of Adenosine A2A Receptor crystals. Sci Rep (2018)

Release Date

2018-01-17

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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