SMTL ID : 5om4.1

Structure of the A2A-StaR2-bRIL562-Compound 4e complex at 1.86A obtained from in meso soaking experiments (24 hour soak).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x T4E: 4-(3-amino-5-phenyl-1,2,4-triazin-6-yl)-2-chlorophenol(Non-covalent)

T4E.1: 15 residues within 4Å: Chain A: A.73, I.76, V.94, L.95, F.178, E.179, M.187, W.352, L.355, H.356, N.359, M.376, I.380, A.383, H.384 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.76, A:V.94, A:L.95, A:F.178, A:F.178, A:W.352, A:L.355, A:L.355, A:I.380 Hydrogen bonds: A:N.359, A:N.359 Water bridges: A:A.69 Salt bridges: A:E.179 pi-Stacking: A:F.178

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.62, S.101, N.386 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.62, A:S.101, A:N.386 Water bridges: A:D.62

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 9 residues within 4Å: Chain A: A.83, H.85, G.86, F.89, F.143, L.147 Ligands: CLR.4, OLC.28, OLC.32 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.83, A:F.89, A:F.143, A:L.147 CLR.4: 9 residues within 4Å: Chain A: F.72, F.80, A.82, A.83, G.86, F.89, I.90 Ligands: CLR.3, OLC.27 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.72, A:F.80, A:A.82, A:A.83, A:F.89 Hydrogen bonds: A:A.83 Water bridges: A:Q.173 CLR.5: 11 residues within 4Å: Chain A: L.350, L.353, P.354, I.358, F.361, C.368, S.369, A.371, L.375 Ligands: OLA.21, OLA.22 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.350, A:L.353, A:P.354, A:I.358, A:F.361, A:L.375 Hydrogen bonds: A:S.369 CLR.6: 7 residues within 4Å: Chain A: L.353, I.357, C.360, F.361, F.364, C.365 Ligands: OLC.23 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.353, A:I.357, A:F.361, A:F.361, A:F.361, A:F.364

16 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.7: 7 residues within 4Å: Chain A: T.75, T.78, F.80 Ligands: OLA.17, OLC.25, OLC.27, OLC.31 Ligand excluded by PLIP OLA.8: 3 residues within 4Å: Chain A: S.17, T.21, A.25 Ligand excluded by PLIP OLA.9: 8 residues within 4Å: Chain A: F.54, F.103, A.107, I.110, D.111, V.126, I.134, C.138 Ligand excluded by PLIP OLA.10: 8 residues within 4Å: Chain A: R.130, G.133, I.137, V.140, L.141, A.144 Ligands: OLC.24, OLC.26 Ligand excluded by PLIP OLA.11: 7 residues within 4Å: Chain A: G.15, W.374, Y.377, L.378, V.381, T.385 Ligands: OLA.13 Ligand excluded by PLIP OLA.12: 5 residues within 4Å: Chain A: L.201, G.205, L.208, R.209, A.212 Ligand excluded by PLIP OLA.13: 9 residues within 4Å: Chain A: V.22, I.26, L.29, T.385, V.388, V.389, F.392 Ligands: OLA.11, OLA.16 Ligand excluded by PLIP OLA.14: 4 residues within 4Å: Chain A: L.29, L.32, G.33, F.392 Ligand excluded by PLIP OLA.15: 3 residues within 4Å: Chain A: W.374, L.378 Ligands: OLA.22 Ligand excluded by PLIP OLA.16: 3 residues within 4Å: Chain A: I.393, Y.396 Ligands: OLA.13 Ligand excluded by PLIP OLA.17: 3 residues within 4Å: Ligands: OLA.7, OLC.25, OLC.31 Ligand excluded by PLIP OLA.18: 5 residues within 4Å: Chain A: L.197, L.200, L.204, A.342, A.349 Ligand excluded by PLIP OLA.19: 4 residues within 4Å: Chain A: V.35, W.39, W.42 Ligands: OLC.29 Ligand excluded by PLIP OLA.20: 4 residues within 4Å: Chain A: K.339, A.342, I.343, G.346 Ligand excluded by PLIP OLA.21: 5 residues within 4Å: Chain A: L.350, L.375, A.379, L.382 Ligands: CLR.5 Ligand excluded by PLIP OLA.22: 4 residues within 4Å: Chain A: W.374, L.375 Ligands: CLR.5, OLA.15 Ligand excluded by PLIP

11 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.23: 3 residues within 4Å: Chain A: F.364 Ligands: CLR.6, OLC.33 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.364, A:F.364 OLC.24: 7 residues within 4Å: Chain A: H.85, M.150, L.151, G.152, N.154 Ligands: OLA.10, OLC.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.154 OLC.25: 3 residues within 4Å: Ligands: OLA.7, OLA.17, OLC.27 No protein-ligand interaction detected (PLIP) OLC.26: 3 residues within 4Å: Chain A: R.130, I.137 Ligands: OLA.10 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.137 OLC.27: 10 residues within 4Å: Chain A: V.67, L.68, P.71, F.72, T.75, F.80, C.81 Ligands: CLR.4, OLA.7, OLC.25 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.67, A:L.68, A:P.71, A:F.72, A:T.75, A:F.80 Hydrogen bonds: A:C.81, A:C.81 Water bridges: A:Q.173, A:Q.173 OLC.28: 11 residues within 4Å: Chain A: Y.53, L.64, L.68, F.89, F.93, G.128, I.135, W.139, F.143 Ligands: CLR.3, OLC.30 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.64, A:F.89, A:F.93, A:W.139, A:W.139, A:F.143, A:F.143 OLC.29: 8 residues within 4Å: Chain A: C.38, V.41, W.42, Q.48, Y.53, V.56, A.60 Ligands: OLA.19 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.60 Hydrogen bonds: A:W.42, A:Y.53 OLC.30: 5 residues within 4Å: Chain A: A.132, A.136, F.143 Ligands: OLC.28, OLC.32 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.136, A:F.143, A:F.143 OLC.31: 10 residues within 4Å: Chain A: P.12, S.16, I.20, L.24, S.77, T.78, G.79, Q.167 Ligands: OLA.7, OLA.17 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.12, A:I.20, A:L.24 Hydrogen bonds: A:S.16, A:Q.167 OLC.32: 6 residues within 4Å: Chain A: H.85, L.147, M.150 Ligands: CLR.3, OLC.24, OLC.30 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.85, A:L.147 Salt bridges: A:H.85 OLC.33: 4 residues within 4Å: Chain A: Y.189, F.193, F.364 Ligands: OLC.23 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.193, A:F.193 Hydrogen bonds: A:Y.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rucktooa, P. et al., Towards high throughput GPCR crystallography: In Meso soaking of Adenosine A2A Receptor crystals. Sci Rep (2018)

Release Date

2018-01-17

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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