SMTL ID : 5olz.1

Structure of the A2A-StaR2-bRIL562-Compound 4e complex at 1.9A obtained from bespoke co-crystallisation experiments.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x T4E: 4-(3-amino-5-phenyl-1,2,4-triazin-6-yl)-2-chlorophenol(Non-covalent)

T4E.1: 15 residues within 4Å: Chain A: A.73, I.76, V.94, L.95, F.178, E.179, M.187, W.352, L.355, H.356, N.359, M.376, I.380, A.383, H.384 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.76, A:V.94, A:L.95, A:F.178, A:F.178, A:W.352, A:L.355, A:L.355, A:I.380 Hydrogen bonds: A:N.359, A:N.359 Water bridges: A:A.69 Salt bridges: A:E.179 pi-Stacking: A:F.178

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 5 residues within 4Å: Chain A: A.83, H.85, G.86 Ligands: CLR.3, OLC.29 No protein-ligand interaction detected (PLIP) CLR.3: 9 residues within 4Å: Chain A: F.72, A.82, A.83, G.86, F.89, I.90 Ligands: CLR.2, OLC.25, OLC.26 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.72, A:A.82, A:A.83, A:F.89, A:I.90 Hydrogen bonds: A:A.83 CLR.4: 10 residues within 4Å: Chain A: L.353, P.354, I.358, F.361, C.368, S.369, A.371, L.375 Ligands: OLA.18, OLA.19 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.353, A:P.354, A:I.358, A:F.361, A:L.375 Hydrogen bonds: A:S.369 CLR.5: 9 residues within 4Å: Chain A: F.192, L.353, I.357, C.360, F.361, F.364, C.365 Ligands: OLA.15, OLC.21 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.192, A:L.353, A:I.357, A:F.361, A:F.361, A:F.361, A:F.364

15 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.6: 7 residues within 4Å: Chain A: P.71, T.75, F.80 Ligands: OLA.10, OLC.23, OLC.25, OLC.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.78 OLA.7: 8 residues within 4Å: Chain A: F.54, F.103, A.107, I.110, D.111, V.126, I.134, C.138 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.107, A:I.110, A:I.110, A:I.134 OLA.8: 7 residues within 4Å: Chain A: R.130, G.133, I.137, V.140, L.141 Ligands: OLC.22, OLC.24 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.137, A:L.141 OLA.9: 6 residues within 4Å: Chain A: G.15, Y.377, L.378, V.381, T.385 Ligands: OLA.13 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.377, A:L.378, A:V.381 OLA.10: 3 residues within 4Å: Ligands: OLA.6, OLC.23, OLC.28 No protein-ligand interaction detected (PLIP) OLA.11: 5 residues within 4Å: Chain A: L.29, L.32, G.33, L.36, F.392 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.392 OLA.12: 2 residues within 4Å: Chain A: W.374, L.378 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.374, A:L.378 OLA.13: 4 residues within 4Å: Chain A: V.389, I.393 Ligands: OLA.9, OLA.14 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.389, A:I.393 OLA.14: 6 residues within 4Å: Chain A: I.26, T.385, V.388, V.389, F.392 Ligands: OLA.13 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.26, A:T.385, A:V.388, A:V.389, A:F.392 OLA.15: 7 residues within 4Å: Chain A: L.197, L.200, L.204, Y.207, A.342 Ligands: CLR.5, OLA.17 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.197, A:L.204, A:Y.207, A:A.342 OLA.16: 5 residues within 4Å: Chain A: V.35, C.38, W.39, W.42 Ligands: OLC.27 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.35, A:W.39, A:W.39, A:W.39, A:W.42, A:W.42 Hydrogen bonds: A:W.42 OLA.17: 3 residues within 4Å: Chain A: G.346, L.347 Ligands: OLA.15 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.347 OLA.18: 7 residues within 4Å: Chain A: L.350, P.354, L.375, A.379, L.382 Ligands: CLR.4, OLA.19 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.350, A:L.350, A:P.354, A:L.375, A:A.379, A:L.382 OLA.19: 6 residues within 4Å: Chain A: H.370, W.374, L.375, L.378 Ligands: CLR.4, OLA.18 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.374, A:W.374, A:L.375, A:L.378 OLA.32: 5 residues within 4Å: Chain A: S.17, T.21, L.24, V.28 Ligands: OLC.28 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.21, A:L.24, A:V.28 Hydrogen bonds: A:T.21

11 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.20: 3 residues within 4Å: Chain A: Y.189, F.193 Ligands: OLC.21 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.193 Hydrogen bonds: A:Y.189 OLC.21: 4 residues within 4Å: Chain A: F.193, F.364 Ligands: CLR.5, OLC.20 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.193, A:F.364, A:F.364 OLC.22: 7 residues within 4Å: Chain A: H.85, M.150, L.151, G.152, N.154 Ligands: OLA.8, OLC.29 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.151 Hydrogen bonds: A:L.151, A:N.154, A:N.154 OLC.23: 3 residues within 4Å: Ligands: OLA.6, OLA.10, OLC.25 No protein-ligand interaction detected (PLIP) OLC.24: 2 residues within 4Å: Chain A: R.130 Ligands: OLA.8 No protein-ligand interaction detected (PLIP) OLC.25: 11 residues within 4Å: Chain A: V.67, L.68, P.71, F.72, T.75, F.80, C.81, Q.173 Ligands: CLR.3, OLA.6, OLC.23 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.67, A:L.68, A:P.71, A:F.72, A:T.75, A:F.80 Hydrogen bonds: A:C.81, A:C.81, A:Q.173 OLC.26: 10 residues within 4Å: Chain A: Y.53, L.64, L.68, F.93, G.128, I.135, W.139, F.143 Ligands: CLR.3, OLC.30 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.64, A:F.93, A:F.93, A:W.139, A:W.139, A:F.143, A:F.143 Hydrogen bonds: A:G.128 OLC.27: 9 residues within 4Å: Chain A: C.38, V.41, W.42, Q.48, Y.53, V.56, A.60, L.64 Ligands: OLA.16 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.60, A:L.64 Hydrogen bonds: A:W.42, A:Y.53 OLC.28: 9 residues within 4Å: Chain A: P.12, S.16, I.20, S.77, T.78, Q.167 Ligands: OLA.6, OLA.10, OLA.32 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.12, A:I.20, A:T.78 OLC.29: 7 residues within 4Å: Chain A: H.85, F.143, A.144, M.150 Ligands: CLR.2, OLC.22, OLC.30 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.85 OLC.30: 4 residues within 4Å: Chain A: A.136, F.143 Ligands: OLC.26, OLC.29 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.143, A:F.143, A:F.143

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.31: 6 residues within 4Å: Chain A: G.152, W.153, N.154, N.155, P.183, N.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.152, A:N.154, A:N.185

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.33: 5 residues within 4Å: Chain A: D.180, H.370, A.371, P.372, L.373 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.180 Water bridges: A:D.180, A:H.370, A:L.373

1 x NA: SODIUM ION(Non-functional Binders)

NA.34: 3 residues within 4Å: Chain A: D.62, S.101, N.386 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.62, A:S.101, A:N.386 Water bridges: A:D.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rucktooa, P. et al., Towards high throughput GPCR crystallography: In Meso soaking of Adenosine A2A Receptor crystals. Sci Rep (2018)

Release Date

2018-01-17

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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