SMTL ID : 5op8.1

Factor Inhibiting HIF (FIH) in complex with zinc and Molidustat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.200, D.202, H.280, W.297 Ligands: A1H.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.200, A:D.202, A:D.202, A:H.280 ZN.8: 5 residues within 4Å: Chain B: H.200, D.202, H.280, W.297 Ligands: A1H.9 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.200, B:D.202, B:D.202, B:H.280

2 x A1H: 2-(6-morpholin-4-ylpyrimidin-4-yl)-4-(1,2,3-triazol-1-yl)-1~{H}-pyrazol-3-one(Non-covalent)

A1H.2: 20 residues within 4Å: Chain A: Y.94, Y.146, Q.148, L.187, L.189, T.197, H.200, D.202, N.206, F.208, K.215, R.239, I.274, H.280, I.282, T.293, N.295, W.297 Ligands: ZN.1, GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.197, A:K.215 pi-Stacking: A:W.297 A1H.9: 20 residues within 4Å: Chain B: Y.94, Y.146, Q.148, L.187, L.189, T.197, H.200, D.202, N.206, F.208, K.215, R.239, I.274, H.280, I.282, T.293, N.295, W.297 Ligands: ZN.8, GOL.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.197, B:K.215 pi-Stacking: B:W.297

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: D.223, K.312, A.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.313 Water bridges: A:H.314 SO4.4: 5 residues within 4Å: Chain A: R.139, G.140, G.141, E.142, E.143 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.142, A:E.143, A:E.143 Salt bridges: A:R.139 SO4.5: 3 residues within 4Å: Chain A: R.18, R.45, T.66 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.45 SO4.10: 3 residues within 4Å: Chain B: D.223, K.312, A.313 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.313 Water bridges: B:H.314 SO4.11: 5 residues within 4Å: Chain B: R.139, G.140, G.141, E.142, E.143 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.142, B:E.143, B:E.143, B:E.143 Salt bridges: B:R.139 SO4.12: 3 residues within 4Å: Chain B: R.18, R.45, T.66 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.45

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: T.184, S.185, L.187, D.202, E.203, Q.204, R.239, W.297 Ligands: A1H.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.203 GOL.7: 8 residues within 4Å: Chain A: K.100, P.198, Y.231, S.241, Q.242, V.243, D.244, F.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.231, A:Q.242 GOL.13: 9 residues within 4Å: Chain B: T.184, S.185, L.187, D.202, E.203, Q.204, R.239, W.297 Ligands: A1H.9 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.203 GOL.14: 8 residues within 4Å: Chain B: K.100, P.198, Y.231, S.241, Q.242, V.243, D.244, F.245 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.231, B:Q.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeh, T.L. et al., Molecular and cellular mechanisms of HIF prolyl hydroxylase inhibitors in clinical trials. Chem Sci (2017)

Release Date

2017-10-18

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypoxia-inducible factor 1-alpha inhibitor

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