SMTL ID : 6hkp.1

Factor Inhibiting HIF (FIH) in complex with zinc, NOG and ASPP2 (970-992)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.121, E.123 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.121 SO4.2: 1 residues within 4Å: Chain A: R.45 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.45 SO4.3: 3 residues within 4Å: Chain A: Q.149, T.150 Chain B: A.19 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.149, A:T.150 Water bridges: A:T.150, A:N.152 SO4.4: 2 residues within 4Å: Chain A: K.312, A.313 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.313 SO4.5: 4 residues within 4Å: Chain A: R.139, G.141, E.142, E.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.142, A:E.143 Salt bridges: A:R.139 SO4.6: 5 residues within 4Å: Chain A: R.144, E.193, G.194, L.286, N.287 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.193, A:N.287 Salt bridges: A:R.144 SO4.14: 2 residues within 4Å: Chain C: R.121, E.123 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.121 SO4.15: 1 residues within 4Å: Chain C: R.45 2 PLIP interactions: 2 interactions with chain C Water bridges: C:T.66 Salt bridges: C:R.45 SO4.16: 3 residues within 4Å: Chain C: Q.149, T.150 Chain D: A.19 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.149 Water bridges: C:T.150, C:T.150, C:T.150 SO4.17: 2 residues within 4Å: Chain C: K.312, A.313 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.313 SO4.18: 4 residues within 4Å: Chain C: R.139, G.141, E.142, E.143 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.142, C:E.143 Salt bridges: C:R.139 SO4.19: 5 residues within 4Å: Chain C: R.144, E.193, G.194, L.286, N.287 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.193, C:E.193, C:N.287 Salt bridges: C:R.144

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain A: K.100, L.102, Y.231, S.241, Q.242, V.243, D.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.231, A:Q.242 Water bridges: A:S.241 GOL.8: 3 residues within 4Å: Chain A: L.151, N.152, F.163 No protein-ligand interaction detected (PLIP) GOL.9: 3 residues within 4Å: Chain A: F.163, L.164, W.168 No protein-ligand interaction detected (PLIP) GOL.10: 3 residues within 4Å: Chain A: R.34, S.35, D.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.34, A:S.35, A:D.246 GOL.11: 2 residues within 4Å: Chain A: G.156, R.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.157 Water bridges: A:K.158 GOL.20: 7 residues within 4Å: Chain C: K.100, L.102, Y.231, S.241, Q.242, V.243, D.244 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.231, C:Y.231, C:Q.242 Water bridges: C:S.241 GOL.21: 3 residues within 4Å: Chain C: L.151, N.152, F.163 No protein-ligand interaction detected (PLIP) GOL.22: 3 residues within 4Å: Chain C: F.163, L.164, W.168 No protein-ligand interaction detected (PLIP) GOL.23: 3 residues within 4Å: Chain C: R.34, S.35, D.246 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.34, C:S.35, C:D.246 GOL.24: 2 residues within 4Å: Chain C: G.156, R.157 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.157 Water bridges: C:K.158

2 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.12: 13 residues within 4Å: Chain A: Y.146, L.189, T.197, H.200, D.202, N.206, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: ZN.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.146, A:N.206, A:N.295 Salt bridges: A:K.215, A:H.280 OGA.25: 13 residues within 4Å: Chain C: Y.146, L.189, T.197, H.200, D.202, N.206, F.208, K.215, H.280, I.282, N.295, W.297 Ligands: ZN.26 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.197, C:N.206, C:N.295 Salt bridges: C:K.215, C:H.280

2 x ZN: ZINC ION(Non-covalent)

ZN.13: 4 residues within 4Å: Chain A: H.200, D.202, H.280 Ligands: OGA.12 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.200, A:D.202, A:H.280, H2O.2 ZN.26: 4 residues within 4Å: Chain C: H.200, D.202, H.280 Ligands: OGA.25 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.200, C:D.202, C:H.280, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leissing, T.M. et al., Factor Inhibiting HIF (FIH) in complex with zinc, NOG and ASPP2 (970-992). To Be Published

Release Date

2019-09-18

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AC
Apoptosis-stimulating of p53 protein 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
S

D
S

Hypoxia-inducible factor 1-alpha inhibitor

Apoptosis-stimulating of p53 protein 2

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