SMTL ID : 5ox0.1

Glycogen Phosphorylase in complex with CK898

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x B1H: (1S)-1,5-anhydro-1-(3-{4-[hydroxy(oxo)azaniumyl]phenyl}-1H-1,2,4-triazol-5-yl)-D-glucitol(Non-covalent)

B1H.1: 21 residues within 4Å: Chain A: E.89, N.134, G.136, L.137, L.140, Y.281, N.283, N.285, F.286, R.293, H.342, H.378, T.379, V.456, N.485, Y.574, E.673, A.674, S.675, G.676, T.677 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.285, A:N.285, A:N.485, A:E.673, A:E.673, A:A.674, A:S.675, A:G.676, A:G.676 Water bridges: A:L.137, A:D.284, A:K.575, A:T.677 pi-Cation interactions: A:H.342

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 14 residues within 4Å: Chain A: G.135, G.136, W.492, V.568, K.569, K.575, Y.649, R.650, V.651, A.654, G.676, T.677, G.678, K.681 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.649, A:V.651, A:K.681 Hydrogen bonds: A:T.677, A:G.678 Water bridges: A:G.136, A:K.569, A:K.569, A:K.575, A:N.679 Salt bridges: A:K.569, A:K.575

1 x IMP: INOSINIC ACID(Non-covalent)

IMP.3: 4 residues within 4Å: Chain A: Q.73, Y.76, R.310, R.311 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.73 Salt bridges: A:R.310, A:R.311 pi-Stacking: A:Y.76, A:Y.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kyriakis, E. et al., Probing the beta-pocket of the active site of human liver glycogen phosphorylase with 3-(C-beta-d-glucopyranosyl)-5-(4-substituted-phenyl)-1, 2, 4-triazole inhibitors. Bioorg. Chem. (2018)

Release Date

2018-02-28

Peptides

Glycogen phosphorylase, muscle form: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycogen phosphorylase, muscle form

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