SMTL ID : 5oy0.1

Structure of synechocystis photosystem I trimer at 2.5A resolution

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
hetero-2-2-2-2-2-3-2-3-1-2-3-1-1-1-1-1-1-1-1-1-mer
Ligands
285 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
6 x PQN: PHYLLOQUINONE(Non-covalent)
9 x SF4: IRON/SULFUR CLUSTER(Non-covalent)(Covalent)
58 x BCR: BETA-CAROTENE(Non-covalent)
27 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
16 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
4 x ACT: ACETATE ION(Non-functional Binders)
2 x 45D: beta,beta-carotene-4,4'-dione(Non-covalent)
3 x CL: CHLORIDE ION(Non-functional Binders)
7 x ECH: beta,beta-caroten-4-one(Non-covalent)
7 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
6 x CA: CALCIUM ION(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
4 x ZEX: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol(Non-covalent)
5 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
1 x EQ3: (3'R)-3'-hydroxy-beta,beta-caroten-4-one(Non-covalent)
1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Malavath, T. et al., Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis. Biochim. Biophys. Acta (2018)
Release Date
2018-02-21
Peptides
Photosystem I P700 chlorophyll a apoprotein A1: AL
Photosystem I P700 chlorophyll a apoprotein A2: BX
Photosystem I iron-sulfur center: CY
Photosystem I reaction center subunit II: DO
Photosystem I reaction center subunit IV: E0
Photosystem I reaction center subunit III: FQ1
Photosystem I reaction center subunit VIII: GR
Photosystem I reaction center subunit IX: HS3
Photosystem I reaction center subunit PsaK 2: I
Photosystem I reaction center subunit XI: JU
Photosystem I reaction center subunit XII: KV6
Photosystem I P700 chlorophyll a apoprotein A2: M
Photosystem I iron-sulfur center: N
Photosystem I reaction center subunit IV: P
Photosystem I reaction center subunit PsaK 2: T
Photosystem I P700 chlorophyll a apoprotein A1: W
Photosystem I reaction center subunit II: Z
Photosystem I reaction center subunit VIII: 2
Photosystem I reaction center subunit PsaK 2: 4
Photosystem I reaction center subunit XI: 5
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
L
a
B
B
X
2
C
C
Y
3
D
D
O
d
E
E
0
5
F
F
Q
f
1
6
G
I
R
i
H
J
S
j
3
7
I
K
J
L
U
l
K
M
V
m
6
9
M
b
N
c
P
e
T
k
W
1
Z
4
2
h
4
8
5
0
Membrane
We predict this structure to be a membrane protein.

Photosystem I P700 chlorophyll a apoprotein A1

Toggle Identical (AL)

Photosystem I P700 chlorophyll a apoprotein A2

Toggle Identical (BX)

Photosystem I iron-sulfur center

Toggle Identical (CY)

Photosystem I reaction center subunit II

Toggle Identical (DO)

Photosystem I reaction center subunit IV

Toggle Identical (E0)

Photosystem I reaction center subunit III

Toggle Identical (FQ1)

Photosystem I reaction center subunit VIII

Toggle Identical (GR)

Photosystem I reaction center subunit IX

Toggle Identical (HS3)

Photosystem I reaction center subunit PsaK 2

Photosystem I reaction center subunit XI

Toggle Identical (JU)

Photosystem I reaction center subunit XII

Toggle Identical (KV6)

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit IV

Photosystem I reaction center subunit PsaK 2

Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I reaction center subunit II

Photosystem I reaction center subunit VIII

Photosystem I reaction center subunit PsaK 2

Photosystem I reaction center subunit XI

Related Entries With Identical Sequence

4kt0.1 | 4l6v.1 | 4l6v.2 | 4l6v.3 | 6hqb.1 | 6nwa.1 | 6uzv.1 | 7o1v.1 | 7umh.1 | 8am5.1 | 8asl.1 | 8asp.1