SMTL ID : 5pzl.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 2-({3-[1-(2-CYCLOPROPYLETHYL)-6-FLUORO-4-HYDROXY-2-OXO-1,2-DIHYDROQUINOLIN-3-YL]-1,1-DIOXO-1,4-DIHYDRO-1LAMBDA~6~,2,4-BENZOTHIADIAZIN-7-YL}OXY)ACETAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x 23E: (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid(Non-covalent)

23E.1: 19 residues within 4Å: Chain A: V.38, L.393, A.394, A.396, A.397, T.400, I.425, L.426, H.429, F.430, L.493, G.494, V.495, P.496, P.497, R.499, V.500, W.501, R.504 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.393, A:A.396, A:A.397, A:T.400, A:I.425, A:F.430, A:L.493, A:V.495, A:V.495, A:P.496, A:W.501 Hydrogen bonds: A:R.504, A:R.504 Salt bridges: A:R.499

1 x 8XV: 2-({3-[1-(2-cyclopropylethyl)-6-fluoro-4-hydroxy-2-oxo-1,2-dihydroquinolin-3-yl]-1,1-dioxo-1,4-dihydro-1lambda~6~,2,4-benzothiadiazin-7-yl}oxy)acetamide(Non-covalent)

8XV.2: 23 residues within 4Å: Chain A: F.194, P.198, R.201, D.226, T.288, S.289, N.292, C.317, G.318, D.319, D.320, C.367, S.369, L.385, G.411, N.412, M.415, Y.416, Q.447, I.448, Y.449, G.450, S.557 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.198, A:M.415, A:Y.416, A:Y.449 Hydrogen bonds: A:N.292, A:D.319, A:D.319, A:D.319, A:Y.449 Water bridges: A:Q.447, A:G.450, A:G.450 pi-Stacking: A:F.194

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: S.85, V.86, R.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.86 Salt bridges: A:R.121 SO4.4: 5 residues within 4Å: Chain A: R.49, K.52, T.222, R.223, C.224 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:C.224 Water bridges: A:D.221, A:T.222, A:F.225, A:F.225 Salt bridges: A:R.49, A:K.52 SO4.5: 2 residues within 4Å: Chain A: G.517, R.518 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.518 Water bridges: A:R.518, A:R.518, A:A.519 Salt bridges: A:R.518

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeung, K.S. et al., Discovery of a Hepatitis C Virus NS5B Replicase Palm Site Allosteric Inhibitor (BMS-929075) Advanced to Phase 1 Clinical Studies. J. Med. Chem. (2017)

Release Date

2017-05-10

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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