SMTL ID : 5twn.2 (1 other biounit)

CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS5B RNA- DEPENDENT RNA POLYMERASE IN COMPLEX WITH 5-[3-(tert-butylcarbamoyl)phenyl]-6-(ethylamino)-2-(4-fluorophenyl)-N-methylfuro[2,3-b]pyridine-3-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.04 Å

Oligo State

monomer

Ligands

1 x 23E: (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid(Non-covalent)

23E.1: 18 residues within 4Å: Chain A: L.393, A.394, A.396, A.397, T.400, I.425, L.426, H.429, F.430, L.493, G.494, V.495, P.496, P.497, R.499, V.500, W.501, R.504 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.393, A:A.396, A:A.397, A:T.400, A:I.425, A:F.430, A:V.495, A:P.496, A:P.496, A:V.500, A:W.501 Hydrogen bonds: A:R.504, A:R.504 Salt bridges: A:R.499

1 x 7NG: 5-[3-(tert-butylcarbamoyl)phenyl]-6-(ethylamino)-2-(4-fluorophenyl)-N-methylfuro[2,3-b]pyridine-3-carboxamide(Non-covalent)

7NG.2: 28 residues within 4Å: Chain A: F.194, Y.196, P.198, R.201, L.205, L.315, V.316, C.317, D.320, L.321, V.322, L.361, I.364, S.366, C.367, S.369, N.370, V.371, L.385, I.414, M.415, Y.416, I.448, Y.449, Y.453, L.467, W.551, F.552 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.194, A:L.205, A:V.322, A:L.385, A:M.415, A:Y.416, A:Y.449, A:F.552 Hydrogen bonds: A:R.201, A:S.366, A:S.366, A:S.369

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: S.85, V.86, E.87, R.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.86 Salt bridges: A:R.121 SO4.4: 2 residues within 4Å: Chain A: G.517, R.518 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.518 Salt bridges: A:R.518 SO4.5: 2 residues within 4Å: Chain A: K.380, R.381 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.381 Salt bridges: A:R.381 SO4.6: 2 residues within 4Å: Chain A: H.476, S.477 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.476, A:S.477 SO4.7: 5 residues within 4Å: Chain A: R.49, K.52, T.222, R.223, C.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.224 Salt bridges: A:R.49, A:K.52 SO4.8: 4 residues within 4Å: Chain A: K.75, M.188, G.189, S.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.190 Salt bridges: A:K.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eastman, K.J. et al., The discovery of a pan-genotypic, primer grip inhibitor of HCV NS5B polymerase. Medchemcomm (2017)

Release Date

2017-03-15

Peptides

NS5B RNA- DEPENDENT RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NS5B RNA- DEPENDENT RNA POLYMERASE

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