SMTL ID : 5tri.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 3-[(4-chlorophenyl)methoxy]-2-(1-oxo-1,3-dihydro-2H-isoindol-2-yl)benzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 23E: (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid(Non-covalent)

23E.1: 18 residues within 4Å: Chain A: L.393, A.394, A.396, A.397, T.400, I.425, L.426, H.429, F.430, L.493, G.494, V.495, P.496, P.497, R.499, V.500, W.501, R.504 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.393, A:A.396, A:A.397, A:I.425, A:L.426, A:F.430, A:L.493, A:V.495, A:P.496, A:P.497, A:V.500, A:W.501 Hydrogen bonds: A:R.504, A:R.504 Salt bridges: A:R.499

1 x 7HM: 3-[(4-chlorophenyl)methoxy]-2-(1-oxo-1,3-dihydro-2H-isoindol-2-yl)benzoic acid(Non-covalent)

7HM.2: 14 residues within 4Å: Chain A: F.194, P.198, R.201, C.317, C.367, S.369, L.385, G.411, N.412, M.415, Y.416, Q.447, I.448, Y.449 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.194, A:P.198, A:L.385, A:M.415, A:Y.416 Hydrogen bonds: A:Y.449 Water bridges: A:G.450, A:G.450 Halogen bonds: A:M.415

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: S.85, V.86, R.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.86 Water bridges: A:L.84 Salt bridges: A:R.121 SO4.4: 5 residues within 4Å: Chain A: R.49, K.52, T.222, R.223, C.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.224 Water bridges: A:F.225, A:F.225 Salt bridges: A:R.49, A:K.52 SO4.5: 2 residues within 4Å: Chain A: G.517, R.518 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.518 Salt bridges: A:R.518 SO4.6: 3 residues within 4Å: Chain A: R.502, R.506, R.532 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.502, A:R.506, A:R.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parcella, K. et al., Discovery and initial optimization of alkoxyanthranilic acid derivatives as inhibitors of HCV NS5B polymerase. Bioorg. Med. Chem. Lett. (2017)

Release Date

2016-11-30

Peptides

NS5B RNA-DEPENDENT RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS5B RNA-DEPENDENT RNA POLYMERASE

Related Entries With Identical Sequence