SMTL ID : 5qhi.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000271a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: K.27 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: M.133, S.135, H.140 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: C.83 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: C.167, V.168 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: I.91, R.92, V.93, R.94, P.169, F.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.91, A:V.93 EDO.6: 8 residues within 4Å: Chain A: F.11, H.12, R.15, L.141, S.142 Chain B: Q.115, E.158, L.162 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.115, B:E.158, A:H.12, A:R.15 EDO.7: 7 residues within 4Å: Chain A: Q.115, E.158, L.162 Chain B: F.11, H.12, L.141, S.142 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.12, B:S.142, A:Q.115 Water bridges: B:R.15 EDO.8: 8 residues within 4Å: Chain A: I.25, K.116, L.118, M.126, G.128, Y.130, Y.132, V.144 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.128, A:G.128, A:Y.130, A:Y.132, A:Y.132 EDO.9: 4 residues within 4Å: Chain A: H.6, I.7 Chain B: T.5, Q.150 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.7, A:I.7, B:T.5 EDO.11: 4 residues within 4Å: Chain B: I.91, R.92, V.93, F.172 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.91, B:V.93

2 x GOJ: ethyl 1~{H}-pyrazole-4-carboxylate(Non-covalent)

GOJ.10: 9 residues within 4Å: Chain A: V.35, A.37, Y.63, L.119, C.122, D.156, F.159, R.160, Y.163 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.63, A:F.159, A:Y.163 Hydrogen bonds: A:D.156 Water bridges: A:C.122 Salt bridges: A:R.160 pi-Stacking: A:F.159 GOJ.12: 9 residues within 4Å: Chain B: V.35, A.37, Y.63, L.119, C.122, D.156, F.159, R.160, Y.163 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.63 Hydrogen bonds: B:D.156 pi-Stacking: B:F.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-12-19

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein FAM83B

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