SMTL ID : 5qhj.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000709a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-dimer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: K.27 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: M.133, S.135, H.140 Ligand excluded by PLIP IOD.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: C.167, V.168 Ligand excluded by PLIP

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: I.91, R.92, V.93, F.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.91, A:V.93 EDO.6: 7 residues within 4Å: Chain A: Q.115, E.158, L.162 Chain B: F.11, R.15, L.141, S.142 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.142, A:Q.115 Water bridges: B:R.15 EDO.7: 8 residues within 4Å: Chain A: I.25, K.116, L.118, M.126, G.128, Y.130, Y.132, V.144 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.128, A:G.128, A:Y.130, A:Y.132, A:Y.132 EDO.8: 4 residues within 4Å: Chain A: H.6, I.7 Chain B: T.5, Q.150 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.5, A:H.6, A:I.7 EDO.10: 4 residues within 4Å: Chain B: I.91, R.92, V.93, F.172 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.91, B:V.93 EDO.11: 6 residues within 4Å: Chain A: F.11, R.15, S.142 Chain B: Q.115, E.158, L.162 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.15, B:Q.115, B:E.158 Water bridges: A:H.12, A:P.13 EDO.12: 5 residues within 4Å: Chain B: L.119, C.122, D.156, F.159, R.160 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.156 Water bridges: B:C.122

2 x GOV: (2S)-1-{[(2H-1,3-benzodioxol-5-yl)methyl]amino}propan-2-ol(Non-covalent)

GOV.9: 4 residues within 4Å: Chain A: K.30, K.50, E.51, E.54 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.54 Hydrogen bonds: A:K.30 GOV.13: 4 residues within 4Å: Chain B: K.30, K.50, E.51, E.54 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-12-19

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein FAM83B

Related Entries With Identical Sequence