SMTL ID : 5qhl.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000551a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-dimer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: K.27 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: M.133, S.135 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: F.49, C.83 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: C.167, V.168 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: I.91, R.92, V.93, F.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.91, A:V.93 EDO.6: 8 residues within 4Å: Chain A: I.25, K.116, L.118, M.126, G.128, Y.130, Y.132, V.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.128, A:Y.130, A:Y.130, A:Y.132 EDO.7: 4 residues within 4Å: Chain A: H.6, I.7 Chain B: T.5, Q.150 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.5, A:I.7 EDO.9: 4 residues within 4Å: Chain B: I.91, R.92, V.93, F.172 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.91, B:V.93 EDO.10: 6 residues within 4Å: Chain B: V.35, L.119, C.122, D.156, F.159, R.160 No protein-ligand interaction detected (PLIP)

2 x GQ7: [5-(4-aminophenyl)furan-2-yl]methanol(Non-covalent)

GQ7.8: 10 residues within 4Å: Chain A: Q.115, E.158, T.161, L.162, R.165 Chain B: F.11, H.12, R.15, L.141, S.142 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.161, A:L.162, B:F.11, B:L.141 Hydrogen bonds: A:Q.115, A:R.165 Water bridges: A:R.165 pi-Cation interactions: B:R.15 GQ7.11: 10 residues within 4Å: Chain A: F.11, H.12, R.15, L.141, S.142 Chain B: Q.115, E.158, T.161, L.162, R.165 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:T.161, B:L.162, A:F.11, A:L.141 Hydrogen bonds: B:Q.115, B:E.158, B:R.165 Water bridges: B:R.165 pi-Cation interactions: A:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-12-19

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein FAM83B

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