SMTL ID : 5qhn.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000622a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.7, D.8, L.9 Chain B: L.151, S.154 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.154, A:L.9 EDO.2: 5 residues within 4Å: Chain A: T.24, K.27, M.28, K.124, I.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.124 Water bridges: A:K.27, A:E.31 EDO.4: 5 residues within 4Å: Chain A: L.151, S.154 Chain B: I.7, D.8, L.9 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.9, A:S.154 EDO.5: 5 residues within 4Å: Chain B: T.24, K.27, M.28, K.124, I.146 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.124 Water bridges: B:K.27, B:E.31

2 x GQJ: methyl (2~{S},4~{R})-1-(furan-2-ylcarbonyl)-4-oxidanyl-pyrrolidine-2-carboxylate(Non-covalent)

GQJ.3: 9 residues within 4Å: Chain B: H.12, P.13, P.14, T.20, E.137, K.138, A.139, H.140, L.141 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.141 Salt bridges: B:H.12 GQJ.6: 9 residues within 4Å: Chain A: H.12, P.13, P.14, T.20, E.137, K.138, A.139, H.140, L.141 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.141 Salt bridges: A:H.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-12-19

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein FAM83B

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