SMTL ID : 5qhs.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FF000014a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: I.7, D.8, L.9 Chain B: S.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.9, A:L.9 EDO.2: 4 residues within 4Å: Chain A: T.24, K.27, M.28, K.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.27, A:K.124 EDO.4: 4 residues within 4Å: Chain A: S.154 Chain B: I.7, D.8, L.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.8, B:L.9, B:L.9 EDO.5: 4 residues within 4Å: Chain B: T.24, K.27, M.28, K.124 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.27, B:K.124

2 x GQV: 1-methyl-3-oxidanyl-pyridin-2-one(Non-covalent)

GQV.3: 9 residues within 4Å: Chain A: K.116, Y.127, G.128, S.129 Chain B: K.116, Y.127, G.128, S.129 Ligands: GQV.6 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.127 Hydrogen bonds: A:K.116, B:K.116 Water bridges: A:E.114, A:K.116, B:E.114, B:E.114, B:K.116 GQV.6: 9 residues within 4Å: Chain A: K.116, Y.127, G.128, S.129 Chain B: K.116, Y.127, G.128, S.129 Ligands: GQV.3 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:K.116, B:K.116 Water bridges: A:K.116, B:E.114, B:E.114, B:K.116 Hydrophobic interactions: B:Y.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-12-19

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein FAM83B

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