SMTL ID : 5r8k.1

PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z355728146 in complex with INTERLEUKIN-1 BETA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: A.1, P.2, V.3, P.91, K.92, K.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.3, A:K.93 Water bridges: A:K.94 SO4.2: 2 residues within 4Å: Chain A: E.96, R.98 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.96 Salt bridges: A:R.98

1 x S8D: 2-[(2~{R},5~{S})-2,5-dimethylmorpholin-4-yl]-~{N}-ethyl-ethanamide(Non-covalent)

S8D.3: 8 residues within 4Å: Chain A: M.20, E.37, Q.39, V.40, V.41, L.62, K.63, K.65 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.62 Hydrogen bonds: A:V.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nichols, C. et al., Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem. (2020)

Release Date

2020-04-22

Peptides

Interleukin-1 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interleukin-1 beta

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