SMTL ID : 8rzb.2 (3 other biounits)

IL-1beta in complex with covalent DEL hit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x 01: 8-[4-methyl-3-(trifluoromethyl)phenyl]-2-[[(7S)-7-(2-morpholin-4-ylethylcarbamoyl)-4-(phenylsulfonyl)-1,4-diazepan-1-yl]carbonyl]imidazo[1,2-a]pyridine-6-carboxylic acid

01.1: 11 residues within 4Å: Chain A: R.4, L.6, F.46, K.103, E.105, N.108, L.110, T.147, M.148, Q.149, F.150 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.6, A:F.46, A:K.103, A:E.105, A:N.108, A:L.110 Hydrogen bonds: A:R.4, A:M.148, A:F.150 pi-Stacking: A:F.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vulpetti, A. et al., Ligandability Assessment of IL-1 beta by Integrated Hit Identification Approaches. J.Med.Chem. (2024)

Release Date

2024-05-22

Peptides

Interleukin-1 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Interleukin-1 beta

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