SMTL ID : 5rae.1 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM001558a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x S5A: 3-[4-(4-hydroxyphenyl)phenyl]propanoic acid(Non-covalent)

S5A.1: 10 residues within 4Å: Chain A: I.219, D.227, V.230, I.247, H.250, K.251, E.252, K.253, P.254, Y.339 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.230, A:P.254, A:Y.339 Salt bridges: A:H.250 pi-Stacking: A:H.250

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: L.155, P.156, E.157 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: M.142, P.143, T.144, R.145 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: K.128, T.201, N.202, Q.294 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: H.353, H.356 Ligand excluded by PLIP

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.6: 3 residues within 4Å: Chain A: H.204, D.206, H.333 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.204, A:D.206, A:H.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition of Human JMJD1B screened against the DSPL Fragment Library. To Be Published

Release Date

2020-04-22

Peptides

Lysine-specific demethylase 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 3B

Related Entries With Identical Sequence