SMTL ID : 5ras.2 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with XS036302b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x S3J: 2-(4-phenylpiperidin-1-yl)ethanoic acid(Non-covalent)

S3J.1: 9 residues within 4Å: Chain A: S.27, L.29, C.36, H.38, S.62, K.66, R.246, H.250, E.252 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.29 Water bridges: A:K.66, A:K.66, A:R.246, A:E.252, A:E.252 Salt bridges: A:K.66, A:H.250, A:E.252 pi-Cation interactions: A:H.38

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: M.142, P.143, T.144, R.145 Ligand excluded by PLIP

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 3 residues within 4Å: Chain A: H.204, D.206, H.333 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.204, A:D.206, A:H.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition of Human JMJD1B screened against the DSPL Fragment Library. To Be Published

Release Date

2020-04-22

Peptides

Lysine-specific demethylase 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lysine-specific demethylase 3B

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