SMTL ID : 5raf.1 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM001559a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x S5G: (5~{R})-3,4,4-trimethyl-5-(oxidanylamino)-1,3-thiazolidine-2-thione(Non-covalent)

S5G.1: 6 residues within 4Å: Chain A: S.27, C.36, S.62, R.246, H.250, E.252 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.250, A:E.252

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: L.155, P.156, E.157 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: M.142, P.143, T.144, R.145 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: K.128, T.201, N.202, Q.294 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: H.353, H.356 Ligand excluded by PLIP

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.6: 3 residues within 4Å: Chain A: H.204, D.206, H.333 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.204, A:D.206, A:H.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition of Human JMJD1B screened against the DSPL Fragment Library. To Be Published

Release Date

2020-04-22

Peptides

Lysine-specific demethylase 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 3B

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