SMTL ID : 5ryy.1

EPB41L3 PanDDA analysis group deposition -- Crystal Structure of the FERM domain of human EPB41L3 in complex with Z57257264

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x WGV: 1-(3-phenylprop-2-yn-1-yl)piperidine(Non-covalent)

WGV.1: 13 residues within 4Å: Chain A: K.187, L.189, S.190, Y.192, V.194, C.212, S.214, G.215, L.216, L.217, R.227, F.228, A.229 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.217, A:L.217, A:R.227

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: L.12, L.13, G.15, D.107 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.81 Salt bridges: A:D.107

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: S.93, E.94, D.95, R.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.95, A:R.98 Water bridges: A:I.96 EDO.4: 3 residues within 4Å: Chain A: K.58, N.81, R.113 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.58, A:K.58, A:N.81 Water bridges: A:V.82, A:V.82, A:Q.104, A:D.107 EDO.5: 4 residues within 4Å: Chain A: R.113, V.194, D.195, L.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.194, A:L.196 EDO.6: 4 residues within 4Å: Chain A: R.106, E.148, F.149, R.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.106, A:R.106, A:R.150 EDO.7: 1 residues within 4Å: Chain A: R.267 No protein-ligand interaction detected (PLIP) EDO.8: 5 residues within 4Å: Chain A: Y.85, D.108, R.113, V.194, D.195 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., EPB41L3 PanDDA analysis group deposition. To Be Published

Release Date

2020-11-11

Peptides

Isoform 2 of Band 4.1-like protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of Band 4.1-like protein 3

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